Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028895.1
Length=116138
Score E
Sequences producing significant alignments: (Bits) Value
seq2410 86.0 5e-12
seq1262 82.4 6e-11
>seq2410
Length=3205
Score = 86.0 bits (94), Expect = 5e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 38948 TTGGTGCACCTTGCTGGGCTTGAACCAGCGACCTCACCCTTATGAGGGGTTTGCTCTAAC 39007
|||||| || |||||| |||||||||||||||| || ||||||| ||||||||||||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 39008 CAACTAAGCTAAAGG 39022
||||| |||||| ||
Sbjct 967 CAACTGAGCTAAGGG 953
Score = 82.4 bits (90), Expect = 6e-11
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 38959 TGCTGGGCTTGAACCAGCGACCTCACCCTTATGAGGGGTTTGCTCTAACCAACTAAGCTA 39018
|||||| |||||||||||||||| || ||||||| || |||||||||||||| |||||
Sbjct 1847 TGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTA 1788
Query 39019 AAGGCGCTAA 39028
| || |||||
Sbjct 1787 AGGGGGCTAA 1778
Score = 82.4 bits (90), Expect = 6e-11
Identities = 71/87 (82%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 38949 TGGTGCACCTTGCTGGGCTTGAACCAGCGACCTCACCCTTATGAGGGGTTTGCTCTAACC 39008
|||||| | |||||| |||||||||||||||| || ||||||| || ||||||||||
Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319
Query 39009 AACTAAGCTAAAGGCGCTAAATATGGT 39035
|||| |||||| || || | |||| ||
Sbjct 2318 AACTGAGCTAAGGGGGC-ATATATTGT 2293
>seq1262
Length=72559
Score = 82.4 bits (90), Expect = 6e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 38948 TTGGTGCACCTTGCTGGGCTTGAACCAGCGACCTCACCCTTATGAGGGGTTTGCTCTAAC 39007
|||||| || |||||| |||||||||||||||| || ||||||| || |||||||||
Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876
Query 39008 CAACTAAGCTAAAGG 39022
||||| |||||| ||
Sbjct 63877 CAACTGAGCTAAGGG 63891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 371376214443811
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |