Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028895.1 Length=116138 Score E Sequences producing significant alignments: (Bits) Value seq2410 86.0 5e-12 seq1262 82.4 6e-11 >seq2410 Length=3205 Score = 86.0 bits (94), Expect = 5e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 38948 TTGGTGCACCTTGCTGGGCTTGAACCAGCGACCTCACCCTTATGAGGGGTTTGCTCTAAC 39007 |||||| || |||||| |||||||||||||||| || ||||||| |||||||||||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 39008 CAACTAAGCTAAAGG 39022 ||||| |||||| || Sbjct 967 CAACTGAGCTAAGGG 953 Score = 82.4 bits (90), Expect = 6e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 38959 TGCTGGGCTTGAACCAGCGACCTCACCCTTATGAGGGGTTTGCTCTAACCAACTAAGCTA 39018 |||||| |||||||||||||||| || ||||||| || |||||||||||||| ||||| Sbjct 1847 TGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTA 1788 Query 39019 AAGGCGCTAA 39028 | || ||||| Sbjct 1787 AGGGGGCTAA 1778 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 38949 TGGTGCACCTTGCTGGGCTTGAACCAGCGACCTCACCCTTATGAGGGGTTTGCTCTAACC 39008 |||||| | |||||| |||||||||||||||| || ||||||| || |||||||||| Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319 Query 39009 AACTAAGCTAAAGGCGCTAAATATGGT 39035 |||| |||||| || || | |||| || Sbjct 2318 AACTGAGCTAAGGGGGC-ATATATTGT 2293 >seq1262 Length=72559 Score = 82.4 bits (90), Expect = 6e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 38948 TTGGTGCACCTTGCTGGGCTTGAACCAGCGACCTCACCCTTATGAGGGGTTTGCTCTAAC 39007 |||||| || |||||| |||||||||||||||| || ||||||| || ||||||||| Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876 Query 39008 CAACTAAGCTAAAGG 39022 ||||| |||||| || Sbjct 63877 CAACTGAGCTAAGGG 63891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 371376214443811