Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028925.1
Length=170822
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 147 2e-30
seq15896 82.4 8e-11
>seq2789
Length=15484
Score = 147 bits (162), Expect = 2e-30
Identities = 756/1178 (64%), Gaps = 56/1178 (5%)
Strand=Plus/Plus
Query 39380 ATACCAATGTATCCTAGGGACACTGAACTTCTACCGTTTTTAAATAACTCAATTATATCA 39439
|| || || || |||| || | ||| ||| || |||||||| | ||||| ||||||
Sbjct 2742 ATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAATAATATCA 2801
Query 39440 TCGTCGGGTTTAAGACGAACCCCGAATGCACCTTCTTGGTAAAGAATA--GGGGCAACAG 39497
|| || || ||||| | | ||| | |||||||| ||| | |||| ||||||||
Sbjct 2802 TCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCA--GTATACAATATGGGGGCAACCT 2859
Query 39498 TCGCTTTAACTCCTTTTAAGGAATTAATTCTACACATCAAAGCTTCAAAACACAAATTCA 39557
| ||||| || ||||| | | |||||| ||| || | || | | ||| |
Sbjct 2860 TAGCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTA 2919
Query 39558 TTCGTTCATTGAATAATTCAACAAATTTCTGTTCATTGAATTGCGTTCCAATATAAGAAT 39617
|| || | |||| | |||||| |||| |||| | || | | |
Sbjct 2920 ATCTTTTTTCTAATATAAAATTAAATTT---TTCAA--AATTACCA--CATCCT--GCTT 2970
Query 39618 CTAATGCAATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAA 39677
| | ||| || | |||| ||| | | || ||||| | |||||| | |||||| |||
Sbjct 2971 CAATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAA 3030
Query 39678 TTTCATTACCAGTCGAATCTTTCCATACGCTCAA--GAAACTACGGCAACCCATTGGAGA 39735
| ||||||| | ||||| |||| | || ||| || | ||| |||||||| |
Sbjct 3031 TACTATTACCATTTTCATCTT--CATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGT 3088
Query 39736 A--ACAGGAAC-AGATGAGCCGGTGATAGCTTTATTGTTCTTAGCTGAAATAATATCAGG 39792
| |||||| || || | | | | ||| | || || | ||| ||||||||
Sbjct 3089 CTTAAAGGAACCAGTTGTCC---TAACAACTT----GCTCATAATTTAAA--ATATCAGG 3139
Query 39793 ATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTGATATCATAGTTCGGGTCGTC 39852
|||||| | || ||| ||| || || || || || || |||||||| || || |||
Sbjct 3140 ATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATCGCT 3199
Query 39853 TTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAAAATAGGAGT 39909
||| ||| ||||||| | |||| |||||| || || || | | ||
Sbjct 3200 ATTAATTCTATTTGTCCCTTCTTTTATGGCAAA---AACAAGTTTTGGAAATACTGCCGT 3256
Query 39910 TATTCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCG 39969
| || || || | || || || | ||| | | |||| ||| ||||| | ||
Sbjct 3257 TTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATTAATCT 3316
Query 39970 TTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTCACAAAAGGGGTCTGTCCGTTTG 40028
||| | || | | | || ||||| || || ||||| ||||| ||||| ||||
Sbjct 3317 TTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTTG 3375
Query 40029 AACTAAAGAGAGTGTTTACTTCATATTCATAAGCTTGGAATGCATCATATACAT-CTTTT 40087
|| | ||| || | ||||||||| | |||| || |||||| | |||| |||||
Sbjct 3376 CGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACATTCTTTT 3434
Query 40088 TCTGTTTTAGATTGGGCATAATTCAACGCATCAGTGATTTGCCATTTTTCTGCATCCTCA 40147
|| |||| | |||| || | || | ||| | ||||||||| || | |
Sbjct 3435 TCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTCTTTA 3494
Query 40148 ATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAATACTTTGTCTACATTAGCA 40204
|| ||| | || || |||| ||||||| | |||||| | | | | ||| |
Sbjct 3495 ATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAATAT--CGATATTGTTA 3551
Query 40205 AAAGTCGTTCCGCCATATTGGTGAGAAGCAACTTGTGCAGTAATTTGTGCCATAATTGCA 40264
| || ||||| ||||| ||| || ||||| || | ||||| || | || ||
Sbjct 3552 ATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCC 3611
Query 40265 GTAGCAACACCAATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAATCCGTTT 40324
|| || |||||||| ||||||||||| | ||||| || | ||||| || |
Sbjct 3612 GTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCT 3671
Query 40325 TCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAGGGGAATAA 40384
|||||||||||||||||||| ||||| ||||||| | ||||| | || ||||||
Sbjct 3672 TCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAATAA 3731
Query 40385 TCAATATCATGGAAATGAATAATTCCGCTTTCATGTGCTTTCATAATAAAAGAC----GC 40440
|| | |||||| ||||||| || ||||||| || ||| | | | | | |
Sbjct 3732 TCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCTTTGGG 3787
Query 40441 GACCAT---ATTTTTGGCAATGTGTTTAGATACAATACCAGCCATAAGGTCCCGTTGAGT 40497
| || |||||| ||| |||||||| | |||||||| | | || | ||||||
Sbjct 3788 AAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTTTGAGT 3847
Query 40498 TGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 40535
||||| |||| ||||||||||||||| || ||||
Sbjct 3848 TGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
>seq15896
Length=1808
Score = 82.4 bits (90), Expect = 8e-11
Identities = 113/156 (72%), Gaps = 4/156 (3%)
Strand=Plus/Minus
Query 52801 CATGGTTGCTTTCCGGCCGCAATGGCAGACGCCCTTTAATTCAACCAGTTTATCCGAAAT 52860
|||| | ||||| | |||||| ||||||| | |||||||||||||||||||| ||
Sbjct 918 CATGCTGGCTTTTCTGCCGCAGTGGCAGATGGTTTTTAATTCAACCAGTTTATCTGACCA 859
Query 52861 AGCCAGAAG--TCTGGCTGAACCGGGAAATAACTGACCCCGAAAATCTGTTCTTAGCCCG 52918
|| | ||| ||||| |||| |||||||| || ||||||||||| | || ||
Sbjct 858 GGCTAAAAGGTATTGGCT--ACCGATAAATAACTCGCCGCGAAAATCTGTACGTAAGCCA 801
Query 52919 TAACACATAACGGGGATATTGTAATTATCAACCACT 52954
||||| | || || |||| || ||| ||||||
Sbjct 800 TAACAAAGTACAGGTATATCTAAAACATCCACCACT 765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546290295587280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |