Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028925.1 Length=170822 Score E Sequences producing significant alignments: (Bits) Value seq2789 147 2e-30 seq15896 82.4 8e-11 >seq2789 Length=15484 Score = 147 bits (162), Expect = 2e-30 Identities = 756/1178 (64%), Gaps = 56/1178 (5%) Strand=Plus/Plus Query 39380 ATACCAATGTATCCTAGGGACACTGAACTTCTACCGTTTTTAAATAACTCAATTATATCA 39439 || || || || |||| || | ||| ||| || |||||||| | ||||| |||||| Sbjct 2742 ATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAATAATATCA 2801 Query 39440 TCGTCGGGTTTAAGACGAACCCCGAATGCACCTTCTTGGTAAAGAATA--GGGGCAACAG 39497 || || || ||||| | | ||| | |||||||| ||| | |||| |||||||| Sbjct 2802 TCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCA--GTATACAATATGGGGGCAACCT 2859 Query 39498 TCGCTTTAACTCCTTTTAAGGAATTAATTCTACACATCAAAGCTTCAAAACACAAATTCA 39557 | ||||| || ||||| | | |||||| ||| || | || | | ||| | Sbjct 2860 TAGCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTA 2919 Query 39558 TTCGTTCATTGAATAATTCAACAAATTTCTGTTCATTGAATTGCGTTCCAATATAAGAAT 39617 || || | |||| | |||||| |||| |||| | || | | | Sbjct 2920 ATCTTTTTTCTAATATAAAATTAAATTT---TTCAA--AATTACCA--CATCCT--GCTT 2970 Query 39618 CTAATGCAATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAA 39677 | | ||| || | |||| ||| | | || ||||| | |||||| | |||||| ||| Sbjct 2971 CAATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAA 3030 Query 39678 TTTCATTACCAGTCGAATCTTTCCATACGCTCAA--GAAACTACGGCAACCCATTGGAGA 39735 | ||||||| | ||||| |||| | || ||| || | ||| |||||||| | Sbjct 3031 TACTATTACCATTTTCATCTT--CATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGT 3088 Query 39736 A--ACAGGAAC-AGATGAGCCGGTGATAGCTTTATTGTTCTTAGCTGAAATAATATCAGG 39792 | |||||| || || | | | | ||| | || || | ||| |||||||| Sbjct 3089 CTTAAAGGAACCAGTTGTCC---TAACAACTT----GCTCATAATTTAAA--ATATCAGG 3139 Query 39793 ATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTGATATCATAGTTCGGGTCGTC 39852 |||||| | || ||| ||| || || || || || || |||||||| || || ||| Sbjct 3140 ATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATCGCT 3199 Query 39853 TTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAAAATAGGAGT 39909 ||| ||| ||||||| | |||| |||||| || || || | | || Sbjct 3200 ATTAATTCTATTTGTCCCTTCTTTTATGGCAAA---AACAAGTTTTGGAAATACTGCCGT 3256 Query 39910 TATTCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCG 39969 | || || || | || || || | ||| | | |||| ||| ||||| | || Sbjct 3257 TTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATTAATCT 3316 Query 39970 TTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTCACAAAAGGGGTCTGTCCGTTTG 40028 ||| | || | | | || ||||| || || ||||| ||||| ||||| |||| Sbjct 3317 TTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTTG 3375 Query 40029 AACTAAAGAGAGTGTTTACTTCATATTCATAAGCTTGGAATGCATCATATACAT-CTTTT 40087 || | ||| || | ||||||||| | |||| || |||||| | |||| ||||| Sbjct 3376 CGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACATTCTTTT 3434 Query 40088 TCTGTTTTAGATTGGGCATAATTCAACGCATCAGTGATTTGCCATTTTTCTGCATCCTCA 40147 || |||| | |||| || | || | ||| | ||||||||| || | | Sbjct 3435 TCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTCTTTA 3494 Query 40148 ATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAATACTTTGTCTACATTAGCA 40204 || ||| | || || |||| ||||||| | |||||| | | | | ||| | Sbjct 3495 ATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAATAT--CGATATTGTTA 3551 Query 40205 AAAGTCGTTCCGCCATATTGGTGAGAAGCAACTTGTGCAGTAATTTGTGCCATAATTGCA 40264 | || ||||| ||||| ||| || ||||| || | ||||| || | || || Sbjct 3552 ATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCC 3611 Query 40265 GTAGCAACACCAATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAATCCGTTT 40324 || || |||||||| ||||||||||| | ||||| || | ||||| || | Sbjct 3612 GTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCT 3671 Query 40325 TCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAGGGGAATAA 40384 |||||||||||||||||||| ||||| ||||||| | ||||| | || |||||| Sbjct 3672 TCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAATAA 3731 Query 40385 TCAATATCATGGAAATGAATAATTCCGCTTTCATGTGCTTTCATAATAAAAGAC----GC 40440 || | |||||| ||||||| || ||||||| || ||| | | | | | | Sbjct 3732 TCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCTTTGGG 3787 Query 40441 GACCAT---ATTTTTGGCAATGTGTTTAGATACAATACCAGCCATAAGGTCCCGTTGAGT 40497 | || |||||| ||| |||||||| | |||||||| | | || | |||||| Sbjct 3788 AAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTTTGAGT 3847 Query 40498 TGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 40535 ||||| |||| ||||||||||||||| || |||| Sbjct 3848 TGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 >seq15896 Length=1808 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 52801 CATGGTTGCTTTCCGGCCGCAATGGCAGACGCCCTTTAATTCAACCAGTTTATCCGAAAT 52860 |||| | ||||| | |||||| ||||||| | |||||||||||||||||||| || Sbjct 918 CATGCTGGCTTTTCTGCCGCAGTGGCAGATGGTTTTTAATTCAACCAGTTTATCTGACCA 859 Query 52861 AGCCAGAAG--TCTGGCTGAACCGGGAAATAACTGACCCCGAAAATCTGTTCTTAGCCCG 52918 || | ||| ||||| |||| |||||||| || ||||||||||| | || || Sbjct 858 GGCTAAAAGGTATTGGCT--ACCGATAAATAACTCGCCGCGAAAATCTGTACGTAAGCCA 801 Query 52919 TAACACATAACGGGGATATTGTAATTATCAACCACT 52954 ||||| | || || |||| || ||| |||||| Sbjct 800 TAACAAAGTACAGGTATATCTAAAACATCCACCACT 765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546290295587280