Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq2789 145 8e-30 >seq2789 Length=15484 Score = 145 bits (160), Expect = 8e-30 Identities = 497/763 (65%), Gaps = 19/763 (2%) Strand=Plus/Plus Query 113397 AATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGTTGCTTAATGTCGTAATT 113456 ||||||||||||||| | || ||| || || || || ||||| || || || ||||| Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 113457 CGGATCGTCTTTATAAAGATTAACGCCTTCTTCAACGAACATAACAAGCTTAGGGAAAAT 113516 |||||| ||| ||| ||||||| | | | |||||| || || || | Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250 Query 113517 AGGAGTTATTCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 113576 | ||| || || || | || || || | ||| | | |||| ||| ||||| Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310 Query 113577 CATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTTTGTC 113635 | || ||| | || | | | || ||||| || || ||||| || ||||||| Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTC 3369 Query 113636 CGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGT 113695 | |||| || | |||||| | ||||||||| | |||| || ||||| | | Sbjct 3370 CATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACATT 3429 Query 113696 CTTTTTCTGTTTTAGATTGAGCATAATTCAGTGCATCGGCGATTTGCCATTTTTCTGCAT 113755 ||||||| |||| | | |||| || || || || ||| | ||||||||| | Sbjct 3430 CTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTT 3489 Query 113756 CCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACAT 113812 | | ||| ||| | || || |||| ||||||| | ||| || | ||| | || Sbjct 3490 CTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATAT 3546 Query 113813 TCGCAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCCATAA 113872 | || || ||||| || || ||| || || || || | ||||| || | | Sbjct 3547 TGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTA 3606 Query 113873 TTGCAGTAGCAACTCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATC 113932 | || || || ||||||||| ||||||||||| | ||||| || | ||||| | Sbjct 3607 TAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGC 3666 Query 113933 CGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAGGGG 113992 | |||||||||||||||||||| ||||| |||||| | ||||| | || | Sbjct 3667 CACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTG 3726 Query 113993 AATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAAGAC- 114051 ||||||| | |||||| ||||||| || ||||||| || ||| | | | | | Sbjct 3727 AATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCT 3782 Query 114052 ---GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGT 114105 || | || |||||| ||| |||||||| | |||||||| | | || | | Sbjct 3783 TTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTT 3842 Query 114106 TGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 114148 |||||||||| |||| ||||||||||||||| || |||| Sbjct 3843 TGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535017872254320