Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_029000.1 Length=162327 Score E Sequences producing significant alignments: (Bits) Value seq2789 87.8 2e-12 >seq2789 Length=15484 Score = 87.8 bits (96), Expect = 2e-12 Identities = 201/303 (66%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 41515 AATGTCAGGGTACATTCGCTTGGCTGAACATTCCAGAGCAAGGTGTTTAATTTCATAGTT 41574 ||| ||||| |||||||| | | ||||||||| || || || ||||| || ||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 41575 TGGATCTCCAGGATTTAAGTTTATACCAGCTTCCATGAACATAACGAGTTTTGGAAATAC 41634 ||||| | | | || ||| | || ||| ||| | ||| |||||||||||||| Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250 Query 41635 TGGTGTGATGCCATTCTTTCCAAGACCCTTGATTCGTACTTTCAAAATAGCTTTTTGAAT 41694 || || | ||| ||||| | || || |||| | | || || | ||||||||| Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310 Query 41695 TTCTTTTTCGAACCAGTTAGTTCCCATCCCAAATGTAATTGTCACGAACGGTGTTTGGCC 41754 | | |||| || |||| | ||||| || || || || || ||||| || Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTGTCC 3370 Query 41755 ATTCGTGGTGAACATCGTGTTGACTTCGTATTCGAAAGCTTGCATACCGTCATAGATTTC 41814 ||| | ||| || || || | ||| ||||| || |||| | | | ||| | ||| Sbjct 3371 ATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACATTC 3430 Query 41815 TTT 41817 ||| Sbjct 3431 TTT 3433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519116846037480