Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_029009.1 Length=147589 Score E Sequences producing significant alignments: (Bits) Value seq2789 138 1e-27 >seq2789 Length=15484 Score = 138 bits (152), Expect = 1e-27 Identities = 317/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Plus Query 37561 ACCTAAATAACCACATTGTCTT-TTAACA-ACAT-CACATGTTGCAGGGTCATTATTACC 37617 ||||||||| |||||| |||| ||| || | || | | ||||| |||| |||||| Sbjct 2165 ACCTAAATATCCACATACTCTTCTTATCACAGATACTTTTCTTGCA---TCATGATTACC 2221 Query 37618 ACATTGCGGGCATTCATAACCATCTGATGTAGGGTTAAACTCTCCATCAAAACCGCATTC 37677 ||| || || | |||| | ||| | ||| || || | | | || ||||| Sbjct 2222 ACAACTAGGACAAGAAAAACCCTTACTTGTGCAATCAAATTCGCCTTTATATCCACATTC 2281 Query 37678 ATGACATTTATCAATTGGGGTGTTTGTTCCAAGATAAC---CAACTTTATCGTAGCTGTA 37734 || ||| | |||||||| || ||||||||| |||| ||| ||||| | || | Sbjct 2282 ATAACACTCGTCAATTGGAGTATTTGTTCCATAATAAGGCACAAATTTAT---AACTAAA 2338 Query 37735 GTCCCAAACAGCTTCTAACGCCTTAAGGTTGTGAACTAGTTTAGGGTATTCTACATAATG 37794 ||||||||| ||||||| || |||| || | | ||||| ||||| | ||| Sbjct 2339 ATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATTAGGATATTCACCGTAACA 2398 Query 37795 GATAAAACCACCGGAAGCATATTTTGGAAACTCTTTTTCAAAATCAATCTTTTCAAAAGG 37854 ||||| ||||| ||| ||| |||| | |||||||||| ||| |||||| | || Sbjct 2399 AATAAAGCCACCATTTGCAAATTCTGGATATGATTTTTCAAAAAGAATTTTTTCATATGG 2458 Query 37855 TGTTGGAGCTTTGCGAACATCATAGTGGAAGCTATTTGTATAATATTCTTTATCTGTGAT 37914 || | ||| |||||| ||||||| |||||||||||||| | || ||||| | Sbjct 2459 ATTTACTGATTTTTTAACATCCAAGTGGAAACTATTTGTATAATAATTCTTGTCTGTAAC 2518 Query 37915 ATTCTCAATAACTCCGTATTTTTCTGTATCCATGCGACAGAATCTATCAGTTAAACTTTC 37974 | | ||||| || ||| || | |||| | | || ||||||||| | | |||| Sbjct 2519 ACCTTTAATAATGCCAAATTCTTTTTTATCTAATTGGCAAAATCTATCACAAAGATTTTC 2578 Query 37975 ACTTGGTGTTGAGTAGATA-GAGAACCAGATTCCTGTTTCTTTTGTCCA 38022 |||||| || || | | | ||||| | ||||||||| ||| |||| Sbjct 2579 ACTTGGCGTGCTATATAAACTAAAACCATA-TCCTGTTTCATTTTTCCA 2626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471973550043960