Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq2698 109 6e-19 seq1262 84.2 2e-11 >seq2698 Length=11445 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 67756 GTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGCATTAAAGCGAACT 67815 || || ||||||| ||||| || | |||||||| || || | | ||||| | ||| Sbjct 5493 GTGAAAGTTCTGGTAATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACA 5434 Query 67816 GCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATGTTTCACAGCATCT 67875 || || |||||||| | || |||||||| ||||| || |||||||||| || ||||| Sbjct 5433 GCATATCCTGAAACCCTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCA 5374 Query 67876 TCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACCTTCAACTTTAACA 67935 || ||||| || || || || || |||| || ||||||||||||||| | ||| Sbjct 5373 AGAAGTGTTTCTTTTCGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAACTCTTACA 5314 Query 67936 GTCGG 67940 || || Sbjct 5313 GTAGG 5309 >seq1262 Length=72559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 23899 TATGGCTGGAAATTACGGAAATGTGTTGCATGTAATGGGTCTGGGCGATATGATAACTAC 23958 ||||| | ||||| | ||||||||||| ||||| || ||||| | ||||| | | Sbjct 130 TATGGATTTAAATTGAGAAAATGTGTTGCTTGTAACGGTTCTGGAAGGTATGACAGTCAT 71 Query 23959 GGATCGCCAAAATGCAGTTCATGCAACGGCACTGGAAAAGAACGTTATAAA 24009 | || |||||||| ||||| || || || |||||||||||||| |||||| Sbjct 70 CGTTCACCAAAATGTAGTTCTTGTAATGGAACTGGAAAAGAACGATATAAA 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568252968289920