Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_029042.1 Length=156833 Score E Sequences producing significant alignments: (Bits) Value seq2410 100 3e-16 seq1262 100 3e-16 >seq2410 Length=3205 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 19435 TTATTTAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTG 19494 ||||||| ||||| ||| ||||||||||||||||||||| | ||||||||||||| || Sbjct 1034 TTATTTATTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTG 975 Query 19495 CTCTAACC-ACTGAGCTACGGG 19515 |||||||| ||||||||| ||| Sbjct 974 CTCTAACCAACTGAGCTAAGGG 953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 19454 GCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC-ACTGAGCTAC 19512 ||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||| Sbjct 1846 GCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTAA 1787 Query 19513 GGG 19515 ||| Sbjct 1786 GGG 1784 >seq1262 Length=72559 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 19435 TTATTTAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTG 19494 ||||||| ||||| ||| ||||||||||||||||||||| | ||||||||||||| || Sbjct 63810 TTATTTATTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTG 63869 Query 19495 CTCTAACC-ACTGAGCTACGGG 19515 |||||||| ||||||||| ||| Sbjct 63870 CTCTAACCAACTGAGCTAAGGG 63891 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 19454 GCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC-ACTGAGCTAC 19512 ||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||| Sbjct 64414 GCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTAA 64473 Query 19513 GG 19514 || Sbjct 64474 GG 64475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501542869365720