Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq12187 233 2e-56 seq1416 105 6e-18 >seq12187 Length=3570 Score = 233 bits (258), Expect = 2e-56 Identities = 488/720 (68%), Gaps = 14/720 (2%) Strand=Plus/Minus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 || || || || ||||| ||||| |||||||| | ||| |||| ||| || || ||| Sbjct 1728 ACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCA 1669 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 || | ||||||| ||||| | || | ||||||||||||||| |||| || || Sbjct 1668 ATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACAT 1609 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 || || || ||| || | ||||| | || || | | |||| ||||| Sbjct 1608 ATGATTTCAAGTATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAG 1549 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 ||||| ||||||||||| |||||||| | |||||| || || || || || | || Sbjct 1548 GCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCA 1489 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | ||| | || |||||||| || |||| ||| || ||| ||||| || Sbjct 1488 GGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATA 1429 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGC---TTTGTCTTTA 4727 || || || || ||||| |||| |||| | | | || | |||| ||| | Sbjct 1428 CCCTCAACAGCTGCAAATGCTA-TAATACGCTCACCAA--AATTGGCCGATTTCGATGAG 1372 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTGTATATAGCGTT 4786 ||||| | ||||| | ||| || |||||||| ||| || | || | || ||||| Sbjct 1371 ATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCA-GGCAGCGTTTCAATGGCGTT 1313 Query 4787 AAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 ||||| | | || || || || ||| | || || ||||| || | | ||| || Sbjct 1312 AAATAGAAAATCACGTTGTTT---TGTGTCACGTATGTAGGTGTCAATCAAAATGCTGTA 1256 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||||||||| || | |||||| || ||||| || || || ||||| || | || || || Sbjct 1255 CATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGT 1196 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 || ||| ||||| | | || | ||||| || ||||| || || || || ||| ||| Sbjct 1195 TATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGC 1136 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 || ||||| ||||||||||| |||||||| | | || | | | | ||||| ||| Sbjct 1135 GGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCA 1076 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 || || ||| || |||||| ||||| || || |||||||| || ||||| || || Sbjct 1075 GTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016 >seq1416 Length=15246 Score = 105 bits (116), Expect = 6e-18 Identities = 174/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 31671 CTGAACATGCTACGGTTCCTACAAAAGGATCAGAGGGTTCTGCGGGATATGATTTATATA 31730 ||||||||||| |||| || ||||||| || |||| || | |||| | | Sbjct 1996 CTGAACATGCTTTTCCTCCTGTCAAGGGATCAGCACGTGCTGCTGGTTTTGATCTGCGCA 1937 Query 31731 GCGCCTACGACTATGTGGTAGAGGCAAAATCTAGAGCGCTAGTTAAAACCGATATTCAAA 31790 | ||||| ||| | | || | || | | | |||| | || |||||||| || ||| Sbjct 1936 GTGCCTATGACGTTATTGTGAAAGCCAGAGATCGAGCTGTGGTGAAAACCGACATACAAG 1877 Query 31791 TTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAAC 31850 | || ||| || ||||| ||||| | ||||| | ||||| |||||||||||| Sbjct 1876 TGCAGTTGCCTGACGGTTGCTATGGACGTGTGGCTCCACGCTCTGGTTTGGCAGTTAAAA 1817 Query 31851 ACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTG 31910 | || || || ||||| || |||||| ||||| |||||| | ||||| |||| | | Sbjct 1816 ATTTCATAGATGTGGGCGCCGGTGTTGTAGATGAAGACTACCGTGGAAATATTGGCGTGG 1757 Query 31911 TGTTGTTTAAT 31921 ||||||||||| Sbjct 1756 TGTTGTTTAAT 1746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426888000294317