Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq2789 118 1e-21 >seq2789 Length=15484 Score = 118 bits (130), Expect = 1e-21 Identities = 357/542 (66%), Gaps = 17/542 (3%) Strand=Plus/Plus Query 160761 GTTACAAAAGGAGTCTGTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCT 160820 || ||||| || || ||||| |||| || | |||||| | ||||||||| | || Sbjct 3351 GTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCT 3410 Query 160821 TGGAATGCATCGTATACGTCTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCG 160880 || || ||||| | |||||||| |||| | | |||| || | || | | Sbjct 3411 TGAAAAGCATCAAAACATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGG 3470 Query 160881 ATTTGCCATTTTTCTGCATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG- 160938 || | ||||||||| || | ||| ||| | || || |||| ||||||| | Sbjct 3471 ATATTATATTTTTCTGTTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGC 3529 Query 160939 -AAAGTACTTTATCTACATTCGCAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGT 160997 ||| || | ||| | ||| || || ||||| || || ||| || || || Sbjct 3530 TAAAATAAT--ATCGATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGC 3587 Query 160998 GCAGTAATTTGTGCCATAATTGCAGTAGCAACGCCAATTGATTTAGGGGTTTCAATCTGC 161057 || | ||||| || | || || || || |||||||| || |||||||| | Sbjct 3588 GCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCA 3647 Query 161058 GCATTACCTAGCTTAAATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTA 161117 ||||| |||| ||||| || |||||||||||||||||||| ||||| |||||| Sbjct 3648 GCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTA 3707 Query 161118 GTAAATGGAAGAGCAGGGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGC 161177 | ||||| | || |||||||| | |||||| ||||||| || ||||||| Sbjct 3708 AACATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGA 3767 Query 161178 GCTTTCATAATAAAAGAC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAAT 161230 || ||| | | | | | || | || |||||| ||| |||||||| | || Sbjct 3768 GC-GTCA-ACT--ACGTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTAT 3823 Query 161231 ACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTT 161290 |||||| | | || | ||||||||||| |||| ||||||||||||||| || || Sbjct 3824 ACCAGCTAACAAATCTCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATT 3883 Query 161291 TA 161292 || Sbjct 3884 TA 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545740109204400