Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_030953.1
Length=170650
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 118 1e-21
>seq2789
Length=15484
Score = 118 bits (130), Expect = 1e-21
Identities = 357/542 (66%), Gaps = 17/542 (3%)
Strand=Plus/Plus
Query 160761 GTTACAAAAGGAGTCTGTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCT 160820
|| ||||| || || ||||| |||| || | |||||| | ||||||||| | ||
Sbjct 3351 GTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCT 3410
Query 160821 TGGAATGCATCGTATACGTCTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCG 160880
|| || ||||| | |||||||| |||| | | |||| || | || | |
Sbjct 3411 TGAAAAGCATCAAAACATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGG 3470
Query 160881 ATTTGCCATTTTTCTGCATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG- 160938
|| | ||||||||| || | ||| ||| | || || |||| ||||||| |
Sbjct 3471 ATATTATATTTTTCTGTTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGC 3529
Query 160939 -AAAGTACTTTATCTACATTCGCAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGT 160997
||| || | ||| | ||| || || ||||| || || ||| || || ||
Sbjct 3530 TAAAATAAT--ATCGATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGC 3587
Query 160998 GCAGTAATTTGTGCCATAATTGCAGTAGCAACGCCAATTGATTTAGGGGTTTCAATCTGC 161057
|| | ||||| || | || || || || |||||||| || |||||||| |
Sbjct 3588 GCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCA 3647
Query 161058 GCATTACCTAGCTTAAATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTA 161117
||||| |||| ||||| || |||||||||||||||||||| ||||| ||||||
Sbjct 3648 GCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTA 3707
Query 161118 GTAAATGGAAGAGCAGGGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGC 161177
| ||||| | || |||||||| | |||||| ||||||| || |||||||
Sbjct 3708 AACATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGA 3767
Query 161178 GCTTTCATAATAAAAGAC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAAT 161230
|| ||| | | | | | || | || |||||| ||| |||||||| | ||
Sbjct 3768 GC-GTCA-ACT--ACGTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTAT 3823
Query 161231 ACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTT 161290
|||||| | | || | ||||||||||| |||| ||||||||||||||| || ||
Sbjct 3824 ACCAGCTAACAAATCTCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATT 3883
Query 161291 TA 161292
||
Sbjct 3884 TA 3885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545740109204400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |