Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq4032 87.8 3e-12 seq1262 86.0 1e-11 >seq4032 Length=2654 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3259 TTAGTTCAGTCGGTAGAACAGTGGACTGTTAATCCATATGTCGCAGGTTCGATTCCTGCA 3318 |||||||||| |||||||| ||||||||||||||||||||||||| |||||| || |||| Sbjct 1304 TTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAGTCTTGCA 1363 Query 3319 T 3319 | Sbjct 1364 T 1364 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3259 TTAGTTCAGTCGGTAGAACAGTGGACTGTTAATCCATATGTCGCAGGTTCGATTCCTGCA 3318 |||||||||| |||||||| ||||||||||||||||||||||||| |||||| || |||| Sbjct 1567 TTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAGTCTTGCA 1626 Query 3319 T 3319 | Sbjct 1627 T 1627 >seq1262 Length=72559 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 3259 TTAGTTCAGTCGGTAGAACAGTGGACTGTTAATCCATATGTCGCAGGTTCGATTCCTGCA 3318 |||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||| ||| Sbjct 60812 TTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCTGGTTCGAGTCCAGCA 60753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788014043154000