Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_031011.1
Length=168993
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 132 5e-26
>seq2789
Length=15484
Score = 132 bits (146), Expect = 5e-26
Identities = 499/767 (65%), Gaps = 27/767 (4%)
Strand=Plus/Plus
Query 108451 AATATCAGGATACATTCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 108510
||||||||||||||||| || ||| ||| || || || || || || |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 108511 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAA 108567
|||||| ||| ||| ||||||| | |||| |||||| || || ||
Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAA---AACAAGTTTTGGAAA 3247
Query 108568 AATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTG 108627
| | ||| | || || | || || || | ||| | | |||| ||| ||
Sbjct 3248 TACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTG 3307
Query 108628 AATCATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGAGTCT 108686
||| | || ||| | || | | | || ||||| || || ||||| || || |
Sbjct 3308 AATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTT 3366
Query 108687 GTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATA 108746
|||| |||| || | |||||| | ||||||||| | |||| || ||||| |
Sbjct 3367 GTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAAC 3426
Query 108747 CGTCTTTTTCTGTTTTAGATTGAGCATAATTTAAC-GCATCAGCGATTTGCCATTTTTCT 108805
|||||||| |||| | | |||| |||| | | || | ||| | ||||||||
Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATA-TTTATCTGGATTGGGGATATTATATTTTTCT 3485
Query 108806 GCATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCT 108862
| || | ||| ||| | || || |||| ||||||| | ||| || | |||
Sbjct 3486 GTTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCG 3542
Query 108863 ACATTAGCAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCC 108922
| ||| || || ||||| || || ||| || || || || | ||||| ||
Sbjct 3543 ATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCA 3602
Query 108923 ATAATTGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGCGCATTACCTAGCTTA 108982
| || || || || |||||||| ||||||||||| | ||||| |||| |||
Sbjct 3603 GTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTA 3662
Query 108983 AATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCA 109042
|| || |||||||||||||||||||| ||||| |||||| | ||||| |
Sbjct 3663 AAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAAT 3722
Query 109043 GGGGAATAATCAATATCGTGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAA 109102
|| |||||||| | ||| || ||||||| || ||||||| || ||| | | |
Sbjct 3723 GGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--AC 3778
Query 109103 GAC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTC 109155
| | || | || |||||| ||| |||||||| | |||||||| | | ||
Sbjct 3779 GTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATC 3838
Query 109156 CCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 109202
| ||||||||||| |||| ||||||||||||||| || ||||
Sbjct 3839 TCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
Score = 82.4 bits (90), Expect = 8e-11
Identities = 185/278 (67%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 107682 AATCCCATACAGCCTCAAGACCTTTTAGGTTATTTTTCATATCAGGAAGTTCAACATAAG 107741
||||||| ||| | || | |||| | || ||| |||||| |||| |||| | |||
Sbjct 2338 AATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATTAGGATATTCACCGTAAC 2397
Query 107742 AAATGTGACCACCTGTCGCAATGAAATGATATGGCGCTTCACGAGAAATTTTTTCAAACG 107801
|||| ||||| | |||| |||||| |||| | |||||||||| | |
Sbjct 2398 AAATAAAGCCACCATTTGCAAATTCTGGATATGATTTTTCAAAAAGAATTTTTTCATATG 2457
Query 107802 GAGTAATATTTTCTTCTACTGAAACGTGGAAACTATTAGTGTACCAGCCTTTATCGGTAA 107861
|| | | || || || | |||||||||||| || || | || || ||||
Sbjct 2458 GATTTACTGATTTTTTAACATCCAAGTGGAAACTATTTGTATAATAATTCTTGTCTGTAA 2517
Query 107862 CATCTTTTACACTTCCATATTTTTCTGTATCAAGTTTACAGAAGCGATAACAAAGGTTTT 107921
|| |||| | | | ||| ||| || | |||| | || || || | || |||||| ||||
Sbjct 2518 CACCTTTAATAATGCCAAATTCTTTTTTATCTAATTGGCAAAATCTATCACAAAGATTTT 2577
Query 107922 CAGCAGGAGTCGAATATAAACTAAAAGCAAATCCAGTT 107959
|| || || ||||||||||||| || |||| |||
Sbjct 2578 CACTTGGCGTGCTATATAAACTAAAACCATATCCTGTT 2615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 540439767132120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |