Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq2789 132 5e-26 >seq2789 Length=15484 Score = 132 bits (146), Expect = 5e-26 Identities = 499/767 (65%), Gaps = 27/767 (4%) Strand=Plus/Plus Query 108451 AATATCAGGATACATTCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 108510 ||||||||||||||||| || ||| ||| || || || || || || |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 108511 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAA 108567 |||||| ||| ||| ||||||| | |||| |||||| || || || Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAA---AACAAGTTTTGGAAA 3247 Query 108568 AATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTG 108627 | | ||| | || || | || || || | ||| | | |||| ||| || Sbjct 3248 TACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTG 3307 Query 108628 AATCATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGAGTCT 108686 ||| | || ||| | || | | | || ||||| || || ||||| || || | Sbjct 3308 AATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTT 3366 Query 108687 GTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATA 108746 |||| |||| || | |||||| | ||||||||| | |||| || ||||| | Sbjct 3367 GTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAAC 3426 Query 108747 CGTCTTTTTCTGTTTTAGATTGAGCATAATTTAAC-GCATCAGCGATTTGCCATTTTTCT 108805 |||||||| |||| | | |||| |||| | | || | ||| | |||||||| Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATA-TTTATCTGGATTGGGGATATTATATTTTTCT 3485 Query 108806 GCATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCT 108862 | || | ||| ||| | || || |||| ||||||| | ||| || | ||| Sbjct 3486 GTTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCG 3542 Query 108863 ACATTAGCAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCC 108922 | ||| || || ||||| || || ||| || || || || | ||||| || Sbjct 3543 ATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCA 3602 Query 108923 ATAATTGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGCGCATTACCTAGCTTA 108982 | || || || || |||||||| ||||||||||| | ||||| |||| ||| Sbjct 3603 GTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTA 3662 Query 108983 AATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCA 109042 || || |||||||||||||||||||| ||||| |||||| | ||||| | Sbjct 3663 AAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAAT 3722 Query 109043 GGGGAATAATCAATATCGTGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAA 109102 || |||||||| | ||| || ||||||| || ||||||| || ||| | | | Sbjct 3723 GGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--AC 3778 Query 109103 GAC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTC 109155 | | || | || |||||| ||| |||||||| | |||||||| | | || Sbjct 3779 GTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATC 3838 Query 109156 CCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 109202 | ||||||||||| |||| ||||||||||||||| || |||| Sbjct 3839 TCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 Score = 82.4 bits (90), Expect = 8e-11 Identities = 185/278 (67%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 107682 AATCCCATACAGCCTCAAGACCTTTTAGGTTATTTTTCATATCAGGAAGTTCAACATAAG 107741 ||||||| ||| | || | |||| | || ||| |||||| |||| |||| | ||| Sbjct 2338 AATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATTAGGATATTCACCGTAAC 2397 Query 107742 AAATGTGACCACCTGTCGCAATGAAATGATATGGCGCTTCACGAGAAATTTTTTCAAACG 107801 |||| ||||| | |||| |||||| |||| | |||||||||| | | Sbjct 2398 AAATAAAGCCACCATTTGCAAATTCTGGATATGATTTTTCAAAAAGAATTTTTTCATATG 2457 Query 107802 GAGTAATATTTTCTTCTACTGAAACGTGGAAACTATTAGTGTACCAGCCTTTATCGGTAA 107861 || | | || || || | |||||||||||| || || | || || |||| Sbjct 2458 GATTTACTGATTTTTTAACATCCAAGTGGAAACTATTTGTATAATAATTCTTGTCTGTAA 2517 Query 107862 CATCTTTTACACTTCCATATTTTTCTGTATCAAGTTTACAGAAGCGATAACAAAGGTTTT 107921 || |||| | | | ||| ||| || | |||| | || || || | || |||||| |||| Sbjct 2518 CACCTTTAATAATGCCAAATTCTTTTTTATCTAATTGGCAAAATCTATCACAAAGATTTT 2577 Query 107922 CAGCAGGAGTCGAATATAAACTAAAAGCAAATCCAGTT 107959 || || || ||||||||||||| || |||| ||| Sbjct 2578 CACTTGGCGTGCTATATAAACTAAAACCATATCCTGTT 2615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540439767132120