Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq6609 125 2e-24 >seq6609 Length=13971 Score = 125 bits (138), Expect = 2e-24 Identities = 189/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 29137 TAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAATTGAACGCCACCCAGG 29196 || ||||| || ||||||||||| | | |||| |||||| ||||| | ||||| | Sbjct 5650 TATATTCTTCCTATATATTCTCCCATTACTCCTAATCCTATTAATTGTATTCCACCTATA 5709 Query 29197 AAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTTCCAAATATTAATTTA 29256 || || | |||| | |||||| || |||| || |||||||||||||| | |||| Sbjct 5710 AATGTAATTGCTACAAATAAAGACGGATAACCAGCAATATTATTTCCAAATAACATTTTA 5769 Query 29257 TCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATAAACAATCCAATGTAA 29316 || ||||| || || ||| || || ||| || || || ||||| |||||| Sbjct 5770 TCTATAATTATTTTAAATCCAAAAATAAAAGAAATAGAGGCCATTAAAAATCCGATGTAA 5829 Query 29317 GTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCCAGCGCCAGGTTCCAT 29376 |||||| | || |||| ||| || ||||||||||| || | ||||| |||||| Sbjct 5830 CACCATATTCTAAGTGGAATTGTGCTAAATGAAGTTATTCCTTCTACCGCCAAATTCCAT 5889 Query 29377 AATTTCCAGCCGTTGAATTTCGAATCACC 29405 || ||||| | || ||||| | ||||| Sbjct 5890 AACTTCCATGCATTAAATTTTGTTTCACC 5918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133617915984398