Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_031020.1
Length=163201
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 212 7e-50
seq2410 96.9 4e-15
seq4088 87.8 2e-12
>seq2789
Length=15484
Score = 212 bits (234), Expect = 7e-50
Identities = 965/1502 (64%), Gaps = 105/1502 (7%)
Strand=Plus/Plus
Query 36782 AAATTCACCATGGTATTCACAAGAAAAACATTGATCAACTGGCGTATTGGTACCAAAATA 36841
|||||| || | ||| |||| | |||| | |||| ||| ||||| || ||| ||||
Sbjct 2258 AAATTCGCCTTTATATCCACATTCATAACACTCGTCAATTGGAGTATTTGTTCCATAATA 2317
Query 36842 ATCCAGATTTTCGATTGC-ATAATCCCATACTTGTTCTAATGCTTCGATATTATCTTTCA 36900
| || | || || | | ||||||| || | ||||||||||| ||||| | | |||
Sbjct 2318 AGGCACAAATTT-ATAACTAAAATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCA 2376
Query 36901 TATTAGGGAGTTCAACATAAGAAATATGTCCACCCTTTGC-AATCCAGTGATAATCTTTT 36959
||||||| |||| | ||| ||||| ||||| ||||| ||| | | |||| ||||
Sbjct 2377 TATTAGGATATTCACCGTAACAAATAAAGCCACCATTTGCAAATTCTG-GATATGATTTT 2435
Query 36960 TCAAAATCAATTTTTTCAAACGGCGTTAC---TTTTTTACGGACGTCAAGATGGAAACTA 37016
|||||| |||||||||| | || |||| ||||||| || || | |||||||||
Sbjct 2436 TCAAAAAGAATTTTTTCATATGGATTTACTGATTTTTTA---ACATCCAAGTGGAAACTA 2492
Query 37017 TTTGTGTACCAGCCTTTATCGATTACTTCATTGATAAACGGAACATTAGTTTCACCGTAT 37076
||||| || || | | ||| || ||| | | ||| | || ||
Sbjct 2493 TTTGTATA---------AT--AATTCTTGTCTG-TAA---CACCTTTAATAATGCCAAAT 2537
Query 37077 TTTTCTTTGTCTAATTTACAAAAACGATAACAAAGACTTTCCGCTGGTGTTGAATAAAGA 37136
| || ||| ||||||| ||||| | || ||||||| |||| ||| || ||| | |
Sbjct 2538 TCTTTTTTATCTAATTGGCAAAATCTATCACAAAGATTTTCACTTGGCGTGCTATATAAA 2597
Query 37137 CTAAATGAAAACCCAGTTTCTTTTGACCACTTATCTAAT-TCGATATTAATAAGACGAAG 37195
||||| | | || ||||| ||| ||| |||||| | | | ||||| ||
Sbjct 2598 CTAAAACCATATCCTGTTTCATTTTTCCAGCTATCTACTGCCTCTCTTAAT-TTTTTAAC 2656
Query 37196 AATATGT-TTACCAAATTCTTGTGCATCCTTATTATCATA---AGGTTCTGAT------G 37245
|||| | | | |||||||| | ||| | ||| ||| | | ||||||||
Sbjct 2657 AATAAATAATCCAAAATTCTT-TTTATCTTCATTGTCAAACATATGTTCTGATTCACTAT 2715
Query 37246 CAAAGATTAATTTTAATGCTTCGTGTAAACCGACATAACCTAATGAAATAGACGAACGTC 37305
|||| ||| || | |||||| | || || | ||| ||||||||||| || | | ||
Sbjct 2716 CAAACATTGCATTAACTGCTTCATTTATTCCTATATAGCCTAATGAAATTGATGCTCTTC 2775
Query 37306 CGTTTTTGAACAGATCAATTATATCATCATTAGGATTCATGCGGACACCAAATGCACCTT 37365
| ||||| || | ||||| |||||||| | ||||| | | | || | |||||||
Sbjct 2776 CATTTTTAAAAATTTCAATAATATCATCTTCTGGATTAAGTCTTATTCCGCAAGCACCTT 2835
Query 37366 CACAATAAAGGATAGGGGCAACAGATGCTTTGACACCTTTTAATGAATCAATACGAGTCA 37425
|| ||| | || |||||||| ||||| |||||||| | ||||| | ||||
Sbjct 2836 CAGTATACAATATGGGGGCAACCTTAGCTTTTACACCTTTGAGCCTTTCAATTCTTGTCA 2895
Query 37426 TTAAGGCTTGTTT-GCATAATTCTAAACGTTCGTACAGACATTCGATAAATCCACTGATT 37484
|||| | || ||| ||| ||| ||| | || | | | || |||| | | ||
Sbjct 2896 TTAATGATTTTTTAGCAATATT-TAATC-TTTTTTCTAATAT----AAAATTAAATTTTT 2949
Query 37485 CGAGCTTGCTTACTAATATAAAGATGATCGAGCGCAATACGAGGGAGGTTTAATGATACA 37544
| | || | | || | | || | || || | || | ||||| ||
Sbjct 2950 CAAAATTAC-----CACATCCTGCT--TCAATTGCTATTCTGGGAATATTTAAACTAACC 3002
Query 37545 ACACCCAGGTTATTTCGACCATC--TAATATTTCTTTACCATTT---TCTTCATAGACAC 37599
||||| | ||||||| ||||| |||| | ||||||||| |||||||| ||
Sbjct 3003 ACACCTAAATTATTTCTTCCATCGTGAATACT--ATTACCATTTTCATCTTCATAAAC-- 3058
Query 37600 TTAAAAAAGAA----CGGCAACCCATAGGAGAAACAGGCACAGAAGAACCAG------TG 37649
| ||| ||| | ||| ||||| || | | | | ||||||| |
Sbjct 3059 --AGAAAGGAAGCTTCTGCACCCCATTGG------CGTCTTAAAGGAACCAGTTGTCCTA 3110
Query 37650 ATATCGCGGTTATTTTTTGAACTAATGATGTCCGGGTACATTCGTTTGGATGAACATTCA 37709
| | | | | || ||| || || || || |||||||||| | ||||||||||
Sbjct 3111 ACAACTTGCTCATAATTTAAA------ATATCAGGATACATTCGTTGTGTTGAACATTCA 3164
Query 37710 AGAGCCAATCGTTTAATTGCATAACCAGGATCTCCCGGATTAA---GGTTAATACCTTCT 37766
|| |||| | |||| || ||||| |||||| | ||||| || | ||||||
Sbjct 3165 AGCGCCAGTTGTTTTATATCATAATTAGGATCGC---TATTAATTCTATTTGTCCCTTCT 3221
Query 37767 TCGATAAACATAACCAGTTTAGGGAAGATTGCAGTGATTTTATTTTTACCAAGACCTTTA 37826
| || | ||| ||||| || || | ||| || |||||||||| || | || ||
Sbjct 3222 TTTATGGCAAAAACAAGTTTTGGAAATACTGCCGTTTTTTTATTTTTTCCTAACCCATTT 3281
Query 37827 ATTCTGTTTTCGAGAATTGATTTCTGAATTAA-CTGAGATTCCCAGGATGTA---CCAGT 37882
||||||||| | |||||||| |||||||| || |||| |||| |||
Sbjct 3282 ATTCTGTTTCTTAATATTGATTTTTGAATTAATCT----TTCCTCTTTTGTAATTCCAAG 3337
Query 37883 ACCAAATGAAACAGTGACAAAAGGTGTTTGTCCATTCGAGCTGAATAATGTGTTAATTTC 37942
||||| || ||| ||||| || ||||||||||| | | | || || ||||||||
Sbjct 3338 TCCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTC 3397
Query 37943 GTATTCATATGCCTGGAATGAATCGTATACTTCTTTTTCTGTTTTCTTTATAGCATAGTT 38002
||||| || | || || | ||| | ||||||||| |||| | || |||| ||
Sbjct 3398 ATATTCTAATCCTTGAAAAGCATCAAAACATTCTTTTTCAATTTTTTCATTAACATATTT 3457
Query 38003 TGATGCTTCTGGGATATCCCATTCGATTGCTGTGTC-ATAGTGTTTTTGATAT--GACAT 38059
|| | ||||||| ||| || |||| || || | || || | ||
Sbjct 3458 ATCTGGATTGGGGATATTATATT---TTTCTGTTTCTTTAATTAACTTTATTTCAGAAGC 3514
Query 38060 TTTTACATAAGGCTCTAATACAATATCGATATTTGCAAAAGTTGTTCCGCCATATTGATG 38119
|||||||||||| |||| | |||||||||||| || |||||||| ||||| |||
Sbjct 3515 TTTTACATAAGGGGCTAAAATAATATCGATATTGTTAATCGTTGTTCCACCATAAGTATG 3574
Query 38120 AGAAGCAACCTGAGCAGTTATCTGAGCCATAATGGCACAAGCAACAGAAATAGATTTTGG 38179
| || || || || |||| ||||| | || || || ||| || |||
Sbjct 3575 ACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGTGG 3634
Query 38180 TGTTTCGATTTGGGCATTACCAAGTTTAAACCCGTTATCAAACAATGTTTTTAGGTCAAC 38239
||||| |||| ||||| || | |||||| || |||| || | ||||| |||||
Sbjct 3635 AGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAAC 3694
Query 38240 TA 38241
||
Sbjct 3695 TA 3696
>seq2410
Length=3205
Score = 96.9 bits (106), Expect = 4e-15
Identities = 88/111 (79%), Gaps = 4/111 (4%)
Strand=Plus/Minus
Query 66403 TGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCC 66462
|||| |||| | ||||||||||||| ||||| |||| || |||||||| |||||| |||
Sbjct 1684 TGGCGCACCTAATAGGATTCGAACCTATGACCAACGGTTTCGAAGGCCGCTGCTCTGTCC 1625
Query 66463 AGCTGAGCTAAGAGTGCATTAATTTGGTGTCCAAGGTGGGATTTGAACCCA 66513
| |||||||| ||||| |||||| ||| | ||||||| |||||||
Sbjct 1624 AACTGAGCTATAAGTGC----ATTTGGCGTCATATATGGGATTCGAACCCA 1578
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 66413 TACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472
|| ||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 939 TATAGGATTCGAACCTATGACCTACTGCTTAGAAGGCAGTTGCTCTATCCAACTGAGCTA 880
Query 66473 AGAGTGCATTAAT 66485
| | ||||| ||
Sbjct 879 ACAACGCATTTAT 867
>seq4088
Length=5036
Score = 87.8 bits (96), Expect = 2e-12
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 66417 GGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTAAGAG 66476
||| ||||||| | ||||||| ||||||||||| ||||||||||||| ||||||||| ||
Sbjct 4310 GGACTCGAACCAGCGACCTACCGCTTAGAAGGCGGTTGCTCTATCCAACTGAGCTAACAG 4251
Query 66477 TGCATTAATTT 66487
||||||| ||
Sbjct 4250 CGCATTAACTT 4240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521912560564440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |