Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq2789 212 7e-50 seq2410 96.9 4e-15 seq4088 87.8 2e-12 >seq2789 Length=15484 Score = 212 bits (234), Expect = 7e-50 Identities = 965/1502 (64%), Gaps = 105/1502 (7%) Strand=Plus/Plus Query 36782 AAATTCACCATGGTATTCACAAGAAAAACATTGATCAACTGGCGTATTGGTACCAAAATA 36841 |||||| || | ||| |||| | |||| | |||| ||| ||||| || ||| |||| Sbjct 2258 AAATTCGCCTTTATATCCACATTCATAACACTCGTCAATTGGAGTATTTGTTCCATAATA 2317 Query 36842 ATCCAGATTTTCGATTGC-ATAATCCCATACTTGTTCTAATGCTTCGATATTATCTTTCA 36900 | || | || || | | ||||||| || | ||||||||||| ||||| | | ||| Sbjct 2318 AGGCACAAATTT-ATAACTAAAATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCA 2376 Query 36901 TATTAGGGAGTTCAACATAAGAAATATGTCCACCCTTTGC-AATCCAGTGATAATCTTTT 36959 ||||||| |||| | ||| ||||| ||||| ||||| ||| | | |||| |||| Sbjct 2377 TATTAGGATATTCACCGTAACAAATAAAGCCACCATTTGCAAATTCTG-GATATGATTTT 2435 Query 36960 TCAAAATCAATTTTTTCAAACGGCGTTAC---TTTTTTACGGACGTCAAGATGGAAACTA 37016 |||||| |||||||||| | || |||| ||||||| || || | ||||||||| Sbjct 2436 TCAAAAAGAATTTTTTCATATGGATTTACTGATTTTTTA---ACATCCAAGTGGAAACTA 2492 Query 37017 TTTGTGTACCAGCCTTTATCGATTACTTCATTGATAAACGGAACATTAGTTTCACCGTAT 37076 ||||| || || | | ||| || ||| | | ||| | || || Sbjct 2493 TTTGTATA---------AT--AATTCTTGTCTG-TAA---CACCTTTAATAATGCCAAAT 2537 Query 37077 TTTTCTTTGTCTAATTTACAAAAACGATAACAAAGACTTTCCGCTGGTGTTGAATAAAGA 37136 | || ||| ||||||| ||||| | || ||||||| |||| ||| || ||| | | Sbjct 2538 TCTTTTTTATCTAATTGGCAAAATCTATCACAAAGATTTTCACTTGGCGTGCTATATAAA 2597 Query 37137 CTAAATGAAAACCCAGTTTCTTTTGACCACTTATCTAAT-TCGATATTAATAAGACGAAG 37195 ||||| | | || ||||| ||| ||| |||||| | | | ||||| || Sbjct 2598 CTAAAACCATATCCTGTTTCATTTTTCCAGCTATCTACTGCCTCTCTTAAT-TTTTTAAC 2656 Query 37196 AATATGT-TTACCAAATTCTTGTGCATCCTTATTATCATA---AGGTTCTGAT------G 37245 |||| | | | |||||||| | ||| | ||| ||| | | |||||||| Sbjct 2657 AATAAATAATCCAAAATTCTT-TTTATCTTCATTGTCAAACATATGTTCTGATTCACTAT 2715 Query 37246 CAAAGATTAATTTTAATGCTTCGTGTAAACCGACATAACCTAATGAAATAGACGAACGTC 37305 |||| ||| || | |||||| | || || | ||| ||||||||||| || | | || Sbjct 2716 CAAACATTGCATTAACTGCTTCATTTATTCCTATATAGCCTAATGAAATTGATGCTCTTC 2775 Query 37306 CGTTTTTGAACAGATCAATTATATCATCATTAGGATTCATGCGGACACCAAATGCACCTT 37365 | ||||| || | ||||| |||||||| | ||||| | | | || | ||||||| Sbjct 2776 CATTTTTAAAAATTTCAATAATATCATCTTCTGGATTAAGTCTTATTCCGCAAGCACCTT 2835 Query 37366 CACAATAAAGGATAGGGGCAACAGATGCTTTGACACCTTTTAATGAATCAATACGAGTCA 37425 || ||| | || |||||||| ||||| |||||||| | ||||| | |||| Sbjct 2836 CAGTATACAATATGGGGGCAACCTTAGCTTTTACACCTTTGAGCCTTTCAATTCTTGTCA 2895 Query 37426 TTAAGGCTTGTTT-GCATAATTCTAAACGTTCGTACAGACATTCGATAAATCCACTGATT 37484 |||| | || ||| ||| ||| ||| | || | | | || |||| | | || Sbjct 2896 TTAATGATTTTTTAGCAATATT-TAATC-TTTTTTCTAATAT----AAAATTAAATTTTT 2949 Query 37485 CGAGCTTGCTTACTAATATAAAGATGATCGAGCGCAATACGAGGGAGGTTTAATGATACA 37544 | | || | | || | | || | || || | || | ||||| || Sbjct 2950 CAAAATTAC-----CACATCCTGCT--TCAATTGCTATTCTGGGAATATTTAAACTAACC 3002 Query 37545 ACACCCAGGTTATTTCGACCATC--TAATATTTCTTTACCATTT---TCTTCATAGACAC 37599 ||||| | ||||||| ||||| |||| | ||||||||| |||||||| || Sbjct 3003 ACACCTAAATTATTTCTTCCATCGTGAATACT--ATTACCATTTTCATCTTCATAAAC-- 3058 Query 37600 TTAAAAAAGAA----CGGCAACCCATAGGAGAAACAGGCACAGAAGAACCAG------TG 37649 | ||| ||| | ||| ||||| || | | | | ||||||| | Sbjct 3059 --AGAAAGGAAGCTTCTGCACCCCATTGG------CGTCTTAAAGGAACCAGTTGTCCTA 3110 Query 37650 ATATCGCGGTTATTTTTTGAACTAATGATGTCCGGGTACATTCGTTTGGATGAACATTCA 37709 | | | | | || ||| || || || || |||||||||| | |||||||||| Sbjct 3111 ACAACTTGCTCATAATTTAAA------ATATCAGGATACATTCGTTGTGTTGAACATTCA 3164 Query 37710 AGAGCCAATCGTTTAATTGCATAACCAGGATCTCCCGGATTAA---GGTTAATACCTTCT 37766 || |||| | |||| || ||||| |||||| | ||||| || | |||||| Sbjct 3165 AGCGCCAGTTGTTTTATATCATAATTAGGATCGC---TATTAATTCTATTTGTCCCTTCT 3221 Query 37767 TCGATAAACATAACCAGTTTAGGGAAGATTGCAGTGATTTTATTTTTACCAAGACCTTTA 37826 | || | ||| ||||| || || | ||| || |||||||||| || | || || Sbjct 3222 TTTATGGCAAAAACAAGTTTTGGAAATACTGCCGTTTTTTTATTTTTTCCTAACCCATTT 3281 Query 37827 ATTCTGTTTTCGAGAATTGATTTCTGAATTAA-CTGAGATTCCCAGGATGTA---CCAGT 37882 ||||||||| | |||||||| |||||||| || |||| |||| ||| Sbjct 3282 ATTCTGTTTCTTAATATTGATTTTTGAATTAATCT----TTCCTCTTTTGTAATTCCAAG 3337 Query 37883 ACCAAATGAAACAGTGACAAAAGGTGTTTGTCCATTCGAGCTGAATAATGTGTTAATTTC 37942 ||||| || ||| ||||| || ||||||||||| | | | || || |||||||| Sbjct 3338 TCCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTC 3397 Query 37943 GTATTCATATGCCTGGAATGAATCGTATACTTCTTTTTCTGTTTTCTTTATAGCATAGTT 38002 ||||| || | || || | ||| | ||||||||| |||| | || |||| || Sbjct 3398 ATATTCTAATCCTTGAAAAGCATCAAAACATTCTTTTTCAATTTTTTCATTAACATATTT 3457 Query 38003 TGATGCTTCTGGGATATCCCATTCGATTGCTGTGTC-ATAGTGTTTTTGATAT--GACAT 38059 || | ||||||| ||| || |||| || || | || || | || Sbjct 3458 ATCTGGATTGGGGATATTATATT---TTTCTGTTTCTTTAATTAACTTTATTTCAGAAGC 3514 Query 38060 TTTTACATAAGGCTCTAATACAATATCGATATTTGCAAAAGTTGTTCCGCCATATTGATG 38119 |||||||||||| |||| | |||||||||||| || |||||||| ||||| ||| Sbjct 3515 TTTTACATAAGGGGCTAAAATAATATCGATATTGTTAATCGTTGTTCCACCATAAGTATG 3574 Query 38120 AGAAGCAACCTGAGCAGTTATCTGAGCCATAATGGCACAAGCAACAGAAATAGATTTTGG 38179 | || || || || |||| ||||| | || || || ||| || ||| Sbjct 3575 ACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGTGG 3634 Query 38180 TGTTTCGATTTGGGCATTACCAAGTTTAAACCCGTTATCAAACAATGTTTTTAGGTCAAC 38239 ||||| |||| ||||| || | |||||| || |||| || | ||||| ||||| Sbjct 3635 AGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAAC 3694 Query 38240 TA 38241 || Sbjct 3695 TA 3696 >seq2410 Length=3205 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 4/111 (4%) Strand=Plus/Minus Query 66403 TGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCC 66462 |||| |||| | ||||||||||||| ||||| |||| || |||||||| |||||| ||| Sbjct 1684 TGGCGCACCTAATAGGATTCGAACCTATGACCAACGGTTTCGAAGGCCGCTGCTCTGTCC 1625 Query 66463 AGCTGAGCTAAGAGTGCATTAATTTGGTGTCCAAGGTGGGATTTGAACCCA 66513 | |||||||| ||||| |||||| ||| | ||||||| ||||||| Sbjct 1624 AACTGAGCTATAAGTGC----ATTTGGCGTCATATATGGGATTCGAACCCA 1578 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 66413 TACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472 || ||||||||||||| |||||||| ||||||||||| ||||||||||||| |||||||| Sbjct 939 TATAGGATTCGAACCTATGACCTACTGCTTAGAAGGCAGTTGCTCTATCCAACTGAGCTA 880 Query 66473 AGAGTGCATTAAT 66485 | | ||||| || Sbjct 879 ACAACGCATTTAT 867 >seq4088 Length=5036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 66417 GGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTAAGAG 66476 ||| ||||||| | ||||||| ||||||||||| ||||||||||||| ||||||||| || Sbjct 4310 GGACTCGAACCAGCGACCTACCGCTTAGAAGGCGGTTGCTCTATCCAACTGAGCTAACAG 4251 Query 66477 TGCATTAATTT 66487 ||||||| || Sbjct 4250 CGCATTAACTT 4240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521912560564440