Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031030.1 Length=170788 Score E Sequences producing significant alignments: (Bits) Value seq2789 141 1e-28 >seq2789 Length=15484 Score = 141 bits (156), Expect = 1e-28 Identities = 501/767 (65%), Gaps = 27/767 (4%) Strand=Plus/Plus Query 41496 AATGTCAGGATACATTCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTT 41555 ||| ||||||||||||| || ||| || || || || || ||||| |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 41556 CGGATCGTTTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGAAA 41612 |||||| | ||| ||| ||||||| | |||| |||||| || ||||| Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAA---AACAAGTTTTGGAAA 3247 Query 41613 AATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTG 41672 | | ||| | || || | || || || | ||| | | |||| ||| || Sbjct 3248 TACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTG 3307 Query 41673 AATCATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTT 41731 ||| | || ||| | || | | | || ||||| || || ||||| || |||| Sbjct 3308 AATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTT 3366 Query 41732 GCCCGTTTGAACTAAAAAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATA 41791 | || |||| || | |||||| | ||||||||| | |||| || ||||| | | Sbjct 3367 GTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-A 3425 Query 41792 CAT-CTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCT 41850 ||| ||||||| |||| | | |||| || | || | ||| | |||||||| Sbjct 3426 CATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCT 3485 Query 41851 GCATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCT 41907 | || | ||| ||| | || || |||| ||||||| | ||| || | ||| Sbjct 3486 GTTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCG 3542 Query 41908 ACATTAGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCC 41967 | ||| || || ||||| || || ||| || || || || | ||||| || Sbjct 3543 ATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCA 3602 Query 41968 ATAATTGCGGTAGCAACTCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCTAGCTTA 42027 | || || || || ||||||||| ||||||||||| | ||||| |||| ||| Sbjct 3603 GTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTA 3662 Query 42028 AATCCGTTTTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCA 42087 || || ||||||||||||||||||||| ||||| |||||| | ||||| | Sbjct 3663 AAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAAT 3722 Query 42088 GGGGAATAATCAATATCGTGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAATAAAA 42147 || |||||||| | ||| || |||| || || ||||||| || ||| | | | Sbjct 3723 GGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--AC 3778 Query 42148 GAC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTC 42200 | | || | || |||||| ||| |||||||| | |||||||| | | || Sbjct 3779 GTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATC 3838 Query 42201 CCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42247 | ||||||||||| |||| ||||||||||||||| || |||| Sbjct 3839 TCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546181537813920