Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2021 499 4e-136 seq4853 410 2e-109 seq12187 293 3e-74 >seq2021 Length=2943 Score = 499 bits (552), Expect = 4e-136 Identities = 970/1429 (68%), Gaps = 39/1429 (3%) Strand=Plus/Minus Query 76775 ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGT 76834 ||||| ||||| || || | | | || || || || || | ||| |||||||| || Sbjct 2150 ATCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGT 2091 Query 76835 TTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATC 76894 || | || |||| ||||||||||| ||| ||||||||| |||| | || || Sbjct 2090 CTTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTC 2031 Query 76895 GGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 76954 || | ||| || || | ||| ||||||||||| || ||||| || | |||||| ||||| Sbjct 2030 AGCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCAT 1971 Query 76955 TTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATC 77014 ||| ||| ||||| || ||| ||||||| || ||| | | | | || | Sbjct 1970 TTTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTG 1911 Query 77015 TGGAA---GGTTTGTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATC 77071 || | | | ||||||| ||||| |||| || |||||||| ||| || ||||| Sbjct 1910 CGGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATC 1851 Query 77072 ATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAA 77131 ||||| ||| | | ||| || ||| | | || | |||| |||| || | || || Sbjct 1850 ATCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAA 1791 Query 77132 TTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 77191 ||| ||||||||||| | ||| || || |||||| ||||| || || | ||||||||| Sbjct 1790 TTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATT 1731 Query 77192 GTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 77251 || |||| ||||| ||||| || || || ||||| ||||| | | ||| ||| | Sbjct 1730 ATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACG 1671 Query 77252 GAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTAC 77311 | |||||| | ||||| || || || | ||||| ||| ||||| | |||| Sbjct 1670 CACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTGT 1611 Query 77312 AACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA------------GCATATGATCC 77359 | ||| | ||| || |||| |||||| || || ||||| | | | Sbjct 1610 TTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTTC 1551 Query 77360 ATTA-----------TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCT 77408 || | || |||||||| || || | ||||| | ||||| || ||| Sbjct 1550 ATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGCT 1491 Query 77409 TCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATA 77468 ||||| || || |||||||| ||||| || || | | ||| || | |||||| | Sbjct 1490 TCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCA 1431 Query 77469 CTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCA 77528 || ||| | |||||| | | || || || |||||||| ||||| || || |||||||| Sbjct 1430 CTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACCT 1371 Query 77529 ATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCT 77588 || || | ||| | | |||| ||| || || || || | || || ||||| |||||| Sbjct 1370 ATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCT 1311 Query 77589 ATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCA 77648 || ||||| || | ||| | || | |||| | || || || ||||| ||||||| Sbjct 1310 ATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCA 1251 Query 77649 AA--TCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTG 77703 | |||| ||| | |||||||| || | || || || |||| ||||||||| | Sbjct 1250 TAAGTCTTG--TCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAG 1193 Query 77704 CTACCTCATTAGCGTTGGC--ATATTGTATTATCTCGGTACATAGATTACTACATTTGAT 77761 | | |||| || || | ||||| || || || || |||| ||| || || ||||| Sbjct 1192 CAATTTCATC--CGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGAT 1135 Query 77762 AGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGG 77821 |||||| ||||| ||||| || ||||| ||| || | |||||||| || ||| | || Sbjct 1134 AGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGG 1075 Query 77822 AGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCAT 77881 ||| || ||||| | ||| | || ||||| | ||| | | | |||||| | | Sbjct 1074 AGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGT 1015 Query 77882 A-GATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCC 77940 |||| | | ||| || | ||||||| ||| || | || ||||| || |||| Sbjct 1014 GCGATTGGCACGACCT-TCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCC 956 Query 77941 AAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCT 78000 |||| |||| | ||| ||||| | | ||||||||| | |||||| || |||||| ||| Sbjct 955 AAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCT 896 Query 78001 TAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060 || |||||||| || | || ||||||||||||||| ||||| |||||| | | || Sbjct 895 CCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGAT 836 Query 78061 GTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||||| || || ||||| || || | ||| | |||||| | ||||| || ||||| | Sbjct 835 ACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGG 776 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATC 78169 |||||| ||| || || | | || || ||||| ||||||||||| Sbjct 775 GTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATC 727 >seq4853 Length=2014 Score = 410 bits (454), Expect = 2e-109 Identities = 971/1459 (67%), Gaps = 21/1459 (1%) Strand=Plus/Plus Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTAT 77247 |||| || |||| ||||| ||||| || || || ||||| ||||| | | ||| || Sbjct 1 CATTATTGCCCATGATTTGTGCAGTGGAGGCTGTAGGCATTGGTGCAATGAGCAAAGAAT 60 Query 77248 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG 77307 | | | |||||| | ||||| || || || | ||||| ||| ||||| | || Sbjct 61 TACGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAG 120 Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATG 77367 || | ||| | ||| || |||| |||||| || || || ||| || ||| | Sbjct 121 GTGTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAG 180 Query 77368 TTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAA 77427 ||||||| || || | ||||| | ||||| || |||||||| || || ||||||| Sbjct 181 TTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAA 240 Query 77428 TTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTA 77487 | ||||| || || | | ||| || | |||||| ||| ||| | |||||| | | Sbjct 241 TCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAACGCA 300 Query 77488 AAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTAT 77547 || || || |||||||| ||||| || ||||||||||| || || | ||| | | ||| Sbjct 301 TGAGTATCAATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCATAT 360 Query 77548 TGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTC 77607 | ||| || || || || | || || ||||| |||||||| ||||| || | ||| | Sbjct 361 TTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTAC 420 Query 77608 TAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATC--AAATCTTCCATCT---AT 77662 || | |||| | || || || ||||| |||||| || |||| ||| | Sbjct 421 GTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTT--GTCTGGGTT 478 Query 77663 AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG-- 77720 |||||||| || | || || || |||| ||||||||| || | |||| || || Sbjct 479 GACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCAT--CCGGTGCC 536 Query 77721 GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGG 77780 | ||||| || || || || |||| ||| || || ||||||||||| ||||| ||||| Sbjct 537 GAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGA 596 Query 77781 TTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGT 77840 || ||||| ||| || | |||||||| || ||| | ||||| || ||||| | || Sbjct 597 TTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGA 656 Query 77841 GATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCAT-AGATTTGTATCGCCTCTC 77899 | || ||||| | ||| | | | |||||| | | |||| | | || | || Sbjct 657 GCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGCA-CGACCTTC 715 Query 77900 TCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGG 77959 | ||||||| ||| || | || ||||| || |||||||| |||| | ||| || Sbjct 716 ACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGG 775 Query 77960 GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAG 78019 ||| | | ||||||||| | |||||| || |||||| ||| || |||||||| || | Sbjct 776 GCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAA 835 Query 78020 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATT 78079 || |||||||| |||||| |||| |||||| | | || ||||| || || ||||| Sbjct 836 GTCGGGTATCCACAGAGCATAGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATT 895 Query 78080 CTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCAT 78139 || || | ||| | |||||| | ||||| || ||||| ||||| | ||| || || | Sbjct 896 TTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAA 955 Query 78140 AACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCT 78199 | || || ||||| ||||||||||| | || | || |||||| | || | Sbjct 956 GGCACCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACG 1015 Query 78200 CAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC 78259 || ||| || | | ||| ||||| || ||||| || |||| ||| | || | || Sbjct 1016 CAGCATAGGCACTAAACCATTAGAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGC 1075 Query 78260 GCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGC 78315 ||| || |||| | || || || || ||||| ||| || || | |||| Sbjct 1076 GCGTAT----GCAATGCACATTCAGGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGC 1131 Query 78316 AACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAAC 78375 | | | | | | | | |||||||| || |||| | | ||| | || || |||| Sbjct 1132 ATTGCTCTACGGACTTGAAAATACCCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAAC 1191 Query 78376 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAA 78435 || |||| ||| | | || ||||| |||| || ||||| || || |||| Sbjct 1192 AGGAGGACAGTTGTGGGCGTCTTGTGGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAA 1251 Query 78436 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAA 78495 | | || || |||| |||||| ||||| || || | || || ||| || | Sbjct 1252 AATAGCGCTCTGATAGTAAATTGTAGGTTTCTATGGCCGCATCGATATCCTCGCCGTGTA 1311 Query 78496 TTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTT 78555 | || || || |||||||||| | ||| ||||| | || || | | ||| |||| Sbjct 1312 TGCCCACAGCCACACGCATCAGTAGATGTTGAGGACGCTCGACAATTTCCCCATTGATTT 1371 Query 78556 TCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCT 78615 |||| || || || ||| | || || || || || || || || |||||| | | Sbjct 1372 TCAATAAATAGGAACGTTCGAGTGTCTTGAATCCGAAGTAATTATAGCCAAAGTCGCGAT 1431 Query 78616 CGTAAATAATAACAGAATT 78634 | |||||||| | ||||| Sbjct 1432 CATAAATAATGGCGGAATT 1450 >seq12187 Length=3570 Score = 293 bits (324), Expect = 3e-74 Identities = 495/709 (70%), Gaps = 17/709 (2%) Strand=Plus/Minus Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 ||| || || || ||||||||| ||| | || |||||||| || || || || || Sbjct 1717 ATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCAC 1658 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG-ATG 48093 || || || || || |||||||||||||| || | ||||| || ||| || | | Sbjct 1657 AGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATTTCAAG 1598 Query 48094 TTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCAC 48153 | || | | ||| ||| | || ||||||||| ||||| ||||| ||||| |||| Sbjct 1597 TATGCGCTCACG-ACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCAC 1539 Query 48154 AATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTC 48213 |||| | ||||| || | ||| | || || || ||||| || || ||||| || | Sbjct 1538 AATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGAC 1479 Query 48214 CACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGG 48273 ||||||| || ||||| || || | |||||| ||| ||||| || || || || | Sbjct 1478 CACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACAG 1419 Query 48274 CCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTCGTTGTGTATCCAC-CGTTG 48328 | |||||||| ||| | ||| || || |||| |||| || | ||||| | || Sbjct 1418 CTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAG-ATCCAGGCCATG 1360 Query 48329 TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 48388 |||||||||||||||||||| ||| ||||| ||||| || || ||||| ||||| | Sbjct 1359 -GCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAGAAAATC 1301 Query 48389 tttttCATTGCTATCTTTAACGTAAGTA----TCTATTAAAAGACTATACATTTCGGAGT 48444 | ||| | | | | ||||| ||| || || |||| || |||||||| |||| Sbjct 1300 A----CGTTGTTTTGTGTCACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGT 1245 Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504 | | |||||| || || || || || || |||||||| | ||| || || || ||||| | Sbjct 1244 GCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTT 1185 Query 48505 CCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATG 48564 | | || || || ||||||| ||||| || || |||||| || || ||||||| Sbjct 1184 CTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATG 1125 Query 48565 CTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATAT 48624 | || ||||| ||||||| | || || |||| ||| | ||||||||| |||| Sbjct 1124 CCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATAT 1065 Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 | || ||| ||| ||||| || ||||||||||||| || || || || Sbjct 1064 CCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694399190355360