Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq2021 499 4e-136
seq4853 410 2e-109
seq12187 293 3e-74
>seq2021
Length=2943
Score = 499 bits (552), Expect = 4e-136
Identities = 970/1429 (68%), Gaps = 39/1429 (3%)
Strand=Plus/Minus
Query 76775 ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGT 76834
||||| ||||| || || | | | || || || || || | ||| |||||||| ||
Sbjct 2150 ATCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGT 2091
Query 76835 TTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATC 76894
|| | || |||| ||||||||||| ||| ||||||||| |||| | || ||
Sbjct 2090 CTTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTC 2031
Query 76895 GGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 76954
|| | ||| || || | ||| ||||||||||| || ||||| || | |||||| |||||
Sbjct 2030 AGCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCAT 1971
Query 76955 TTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATC 77014
||| ||| ||||| || ||| ||||||| || ||| | | | | || |
Sbjct 1970 TTTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTG 1911
Query 77015 TGGAA---GGTTTGTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATC 77071
|| | | | ||||||| ||||| |||| || |||||||| ||| || |||||
Sbjct 1910 CGGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATC 1851
Query 77072 ATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAA 77131
||||| ||| | | ||| || ||| | | || | |||| |||| || | || ||
Sbjct 1850 ATCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAA 1791
Query 77132 TTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 77191
||| ||||||||||| | ||| || || |||||| ||||| || || | |||||||||
Sbjct 1790 TTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATT 1731
Query 77192 GTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 77251
|| |||| ||||| ||||| || || || ||||| ||||| | | ||| ||| |
Sbjct 1730 ATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACG 1671
Query 77252 GAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTAC 77311
| |||||| | ||||| || || || | ||||| ||| ||||| | ||||
Sbjct 1670 CACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTGT 1611
Query 77312 AACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA------------GCATATGATCC 77359
| ||| | ||| || |||| |||||| || || ||||| | | |
Sbjct 1610 TTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTTC 1551
Query 77360 ATTA-----------TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCT 77408
|| | || |||||||| || || | ||||| | ||||| || |||
Sbjct 1550 ATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGCT 1491
Query 77409 TCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATA 77468
||||| || || |||||||| ||||| || || | | ||| || | |||||| |
Sbjct 1490 TCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCA 1431
Query 77469 CTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCA 77528
|| ||| | |||||| | | || || || |||||||| ||||| || || ||||||||
Sbjct 1430 CTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACCT 1371
Query 77529 ATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCT 77588
|| || | ||| | | |||| ||| || || || || | || || ||||| ||||||
Sbjct 1370 ATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCT 1311
Query 77589 ATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCA 77648
|| ||||| || | ||| | || | |||| | || || || ||||| |||||||
Sbjct 1310 ATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCA 1251
Query 77649 AA--TCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTG 77703
| |||| ||| | |||||||| || | || || || |||| ||||||||| |
Sbjct 1250 TAAGTCTTG--TCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAG 1193
Query 77704 CTACCTCATTAGCGTTGGC--ATATTGTATTATCTCGGTACATAGATTACTACATTTGAT 77761
| | |||| || || | ||||| || || || || |||| ||| || || |||||
Sbjct 1192 CAATTTCATC--CGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGAT 1135
Query 77762 AGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGG 77821
|||||| ||||| ||||| || ||||| ||| || | |||||||| || ||| | ||
Sbjct 1134 AGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGG 1075
Query 77822 AGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCAT 77881
||| || ||||| | ||| | || ||||| | ||| | | | |||||| | |
Sbjct 1074 AGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGT 1015
Query 77882 A-GATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCC 77940
|||| | | ||| || | ||||||| ||| || | || ||||| || ||||
Sbjct 1014 GCGATTGGCACGACCT-TCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCC 956
Query 77941 AAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCT 78000
|||| |||| | ||| ||||| | | ||||||||| | |||||| || |||||| |||
Sbjct 955 AAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCT 896
Query 78001 TAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060
|| |||||||| || | || ||||||||||||||| ||||| |||||| | | ||
Sbjct 895 CCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGAT 836
Query 78061 GTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120
||||| || || ||||| || || | ||| | |||||| | ||||| || ||||| |
Sbjct 835 ACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGG 776
Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATC 78169
|||||| ||| || || | | || || ||||| |||||||||||
Sbjct 775 GTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATC 727
>seq4853
Length=2014
Score = 410 bits (454), Expect = 2e-109
Identities = 971/1459 (67%), Gaps = 21/1459 (1%)
Strand=Plus/Plus
Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTAT 77247
|||| || |||| ||||| ||||| || || || ||||| ||||| | | ||| ||
Sbjct 1 CATTATTGCCCATGATTTGTGCAGTGGAGGCTGTAGGCATTGGTGCAATGAGCAAAGAAT 60
Query 77248 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG 77307
| | | |||||| | ||||| || || || | ||||| ||| ||||| | ||
Sbjct 61 TACGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAG 120
Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATG 77367
|| | ||| | ||| || |||| |||||| || || || ||| || ||| |
Sbjct 121 GTGTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAG 180
Query 77368 TTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAA 77427
||||||| || || | ||||| | ||||| || |||||||| || || |||||||
Sbjct 181 TTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAA 240
Query 77428 TTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTA 77487
| ||||| || || | | ||| || | |||||| ||| ||| | |||||| | |
Sbjct 241 TCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAACGCA 300
Query 77488 AAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTAT 77547
|| || || |||||||| ||||| || ||||||||||| || || | ||| | | |||
Sbjct 301 TGAGTATCAATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCATAT 360
Query 77548 TGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTC 77607
| ||| || || || || | || || ||||| |||||||| ||||| || | ||| |
Sbjct 361 TTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTAC 420
Query 77608 TAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATC--AAATCTTCCATCT---AT 77662
|| | |||| | || || || ||||| |||||| || |||| ||| |
Sbjct 421 GTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTT--GTCTGGGTT 478
Query 77663 AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG-- 77720
|||||||| || | || || || |||| ||||||||| || | |||| || ||
Sbjct 479 GACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCAT--CCGGTGCC 536
Query 77721 GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGG 77780
| ||||| || || || || |||| ||| || || ||||||||||| ||||| |||||
Sbjct 537 GAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGA 596
Query 77781 TTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGT 77840
|| ||||| ||| || | |||||||| || ||| | ||||| || ||||| | ||
Sbjct 597 TTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGA 656
Query 77841 GATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCAT-AGATTTGTATCGCCTCTC 77899
| || ||||| | ||| | | | |||||| | | |||| | | || | ||
Sbjct 657 GCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGCA-CGACCTTC 715
Query 77900 TCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGG 77959
| ||||||| ||| || | || ||||| || |||||||| |||| | ||| ||
Sbjct 716 ACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGG 775
Query 77960 GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAG 78019
||| | | ||||||||| | |||||| || |||||| ||| || |||||||| || |
Sbjct 776 GCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAA 835
Query 78020 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATT 78079
|| |||||||| |||||| |||| |||||| | | || ||||| || || |||||
Sbjct 836 GTCGGGTATCCACAGAGCATAGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATT 895
Query 78080 CTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCAT 78139
|| || | ||| | |||||| | ||||| || ||||| ||||| | ||| || || |
Sbjct 896 TTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAA 955
Query 78140 AACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCT 78199
| || || ||||| ||||||||||| | || | || |||||| | || |
Sbjct 956 GGCACCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACG 1015
Query 78200 CAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC 78259
|| ||| || | | ||| ||||| || ||||| || |||| ||| | || | ||
Sbjct 1016 CAGCATAGGCACTAAACCATTAGAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGC 1075
Query 78260 GCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGC 78315
||| || |||| | || || || || ||||| ||| || || | ||||
Sbjct 1076 GCGTAT----GCAATGCACATTCAGGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGC 1131
Query 78316 AACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAAC 78375
| | | | | | | | |||||||| || |||| | | ||| | || || ||||
Sbjct 1132 ATTGCTCTACGGACTTGAAAATACCCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAAC 1191
Query 78376 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAA 78435
|| |||| ||| | | || ||||| |||| || ||||| || || ||||
Sbjct 1192 AGGAGGACAGTTGTGGGCGTCTTGTGGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAA 1251
Query 78436 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAA 78495
| | || || |||| |||||| ||||| || || | || || ||| || |
Sbjct 1252 AATAGCGCTCTGATAGTAAATTGTAGGTTTCTATGGCCGCATCGATATCCTCGCCGTGTA 1311
Query 78496 TTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTT 78555
| || || || |||||||||| | ||| ||||| | || || | | ||| ||||
Sbjct 1312 TGCCCACAGCCACACGCATCAGTAGATGTTGAGGACGCTCGACAATTTCCCCATTGATTT 1371
Query 78556 TCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCT 78615
|||| || || || ||| | || || || || || || || || |||||| | |
Sbjct 1372 TCAATAAATAGGAACGTTCGAGTGTCTTGAATCCGAAGTAATTATAGCCAAAGTCGCGAT 1431
Query 78616 CGTAAATAATAACAGAATT 78634
| |||||||| | |||||
Sbjct 1432 CATAAATAATGGCGGAATT 1450
>seq12187
Length=3570
Score = 293 bits (324), Expect = 3e-74
Identities = 495/709 (70%), Gaps = 17/709 (2%)
Strand=Plus/Minus
Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034
||| || || || ||||||||| ||| | || |||||||| || || || || ||
Sbjct 1717 ATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCAC 1658
Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG-ATG 48093
|| || || || || |||||||||||||| || | ||||| || ||| || | |
Sbjct 1657 AGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATTTCAAG 1598
Query 48094 TTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCAC 48153
| || | | ||| ||| | || ||||||||| ||||| ||||| ||||| ||||
Sbjct 1597 TATGCGCTCACG-ACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCAC 1539
Query 48154 AATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTC 48213
|||| | ||||| || | ||| | || || || ||||| || || ||||| || |
Sbjct 1538 AATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGAC 1479
Query 48214 CACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGG 48273
||||||| || ||||| || || | |||||| ||| ||||| || || || || |
Sbjct 1478 CACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACAG 1419
Query 48274 CCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTCGTTGTGTATCCAC-CGTTG 48328
| |||||||| ||| | ||| || || |||| |||| || | ||||| | ||
Sbjct 1418 CTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAG-ATCCAGGCCATG 1360
Query 48329 TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 48388
|||||||||||||||||||| ||| ||||| ||||| || || ||||| ||||| |
Sbjct 1359 -GCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAGAAAATC 1301
Query 48389 tttttCATTGCTATCTTTAACGTAAGTA----TCTATTAAAAGACTATACATTTCGGAGT 48444
| ||| | | | | ||||| ||| || || |||| || |||||||| ||||
Sbjct 1300 A----CGTTGTTTTGTGTCACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGT 1245
Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504
| | |||||| || || || || || || |||||||| | ||| || || || ||||| |
Sbjct 1244 GCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTT 1185
Query 48505 CCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATG 48564
| | || || || ||||||| ||||| || || |||||| || || |||||||
Sbjct 1184 CTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATG 1125
Query 48565 CTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATAT 48624
| || ||||| ||||||| | || || |||| ||| | ||||||||| ||||
Sbjct 1124 CCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATAT 1065
Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673
| || ||| ||| ||||| || ||||||||||||| || || || ||
Sbjct 1064 CCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694399190355360
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