Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031045.1 Length=157855 Score E Sequences producing significant alignments: (Bits) Value seq1262 105 7e-18 seq2410 104 2e-17 >seq1262 Length=72559 Score = 105 bits (116), Expect = 7e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 19041 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 19099 |||||| ||||||||| |||||||||| ||||||||||||| | ||||||||||||||| Sbjct 63894 GGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAG 63835 Query 19100 TCCAGCCAGGGTCACCACTAAATAA 19124 |||||| ||| ||||| ||||||| Sbjct 63834 TCCAGCAGGGGCCACCAATAAATAA 63810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 19041 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 19099 ||| || ||||||||| |||||||||| ||||||||||||| | ||||||||||||||| Sbjct 64479 GGCTCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAG 64420 Query 19100 TCCAGC 19105 |||||| Sbjct 64419 TCCAGC 64414 >seq2410 Length=3205 Score = 104 bits (114), Expect = 2e-17 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 19042 GCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAGT 19100 ||||| ||||||||| |||||||||| ||||||||||||| | |||||||||||||||| Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010 Query 19101 CCAGCCAGGGTCACCACTAAATAA 19124 ||||| ||| ||||| ||||||| Sbjct 1011 CCAGCAGGGGCCACCAATAAATAA 1034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 19034 AAATTTTGGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTG 19092 ||| || | |||| ||||||||| |||||||||| ||||||||||||| | |||||||| Sbjct 1774 AAAGTTAGCCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTG 1833 Query 19093 GTTCAAGTCCAGC 19105 ||||||||||||| Sbjct 1834 GTTCAAGTCCAGC 1846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 19040 TGGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAA 19098 || |||| ||||||||| |||||||||| ||||||||||||| |||||||||||||| Sbjct 2301 TGCCCCCTTAGCTCAGTTGGTTAGAGCATACGACTCATAATCGTCAGGTCGCTGGTTCAA 2360 Query 19099 GTCCAGCCAGGGTCACCA 19116 ||||||| | | ||||| Sbjct 2361 GTCCAGCAGGAGGCACCA 2378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504812000082600