Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq2698 113 5e-20 seq1262 87.8 2e-12 >seq2698 Length=11445 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 53404 CCGACTGTTAAAGTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACC 53463 || ||||| | ||||||||||||||| || |||| || || || || || ||||| Sbjct 5309 CCTACTGTAAGAGTTGAAGGTGGACAACATTTAAATGTAAACGTTCTTCGAAAAGAAACA 5368 Query 53464 CTGGAAGATGCTGTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGT 53523 || ||||| || |||||||||| || ||||| |||||||| || | |||||||| Sbjct 5369 CTTCTTGATGCAGTAGAACATCCTGAAAAATACCCGCAGTTAACAATTAGGGTTTCAGGA 5428 Query 53524 TATGCAGTTCGCTTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACC 53583 ||||| ||| | ||||| | | || || |||||||| | || ||||| ||||||| Sbjct 5429 TATGCTGTTAGATTTAACTCTTTAACACCTGAACAACAACAAGATGTTATTACCAGAACT 5488 Query 53584 TTTAC 53588 || || Sbjct 5489 TTCAC 5493 >seq1262 Length=72559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 97328 TTTATAACGTTCTTTTCCAGTGCCGTTGCATGAACTGCATTTTGGCGATCCGTGGTTATC 97387 |||||| |||||||||||||| || || || ||||| |||||||| || | || | || Sbjct 20 TTTATATCGTTCTTTTCCAGTTCCATTACAAGAACTACATTTTGGTGAACGATGACTGTC 79 Query 97388 ATATCGCCCAGACCCATTACATGCAACACATTTCCGTAATTTCCAGCCATA 97438 ||| | ||||| || ||||| ||||||||||| | ||||| | ||||| Sbjct 80 ATACCTTCCAGAACCGTTACAAGCAACACATTTTCTCAATTTAAATCCATA 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576349024889160