Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_031077.1
Length=41760
Score E
Sequences producing significant alignments: (Bits) Value
seq9716 134 4e-27
seq4088 96.9 9e-16
seq17421 89.7 1e-13
>seq9716
Length=2276
Score = 134 bits (148), Expect = 4e-27
Identities = 109/132 (83%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 1107 CAGCGATGTACAGCAACGATCCGGGACACGATAAACGCTGGCGCGCTGACGCTATTCCAT 1166
|||| || |||||||| ||| | | ||||| ||| ||||||||||| || || ||||
Sbjct 1 CAGCCATTTACAGCAATGATGCCGCACACGCTAAGTCATGGCGCGCTGATGCCATCCCAT 60
Query 1167 GGTCTGAGCACAACACTGAAGCATTCGCCGGGCTGCACAACGAGCGCAAGCGCATCATCG 1226
|||| ||| ||||||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct 61 GGTCAGAGAACAACACCGAGGCGTTCGCCGGCCTGCACAACGAGCGAAAGCGCATCATCC 120
Query 1227 TGGTATTCGACG 1238
|| |||||||||
Sbjct 121 TGATATTCGACG 132
Score = 114 bits (126), Expect = 3e-21
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 1769 TTTATCGACTATGGATACGGGACTGGCCTGAAGTCAGTCGGTGATAACTGGGGGCGCTCA 1828
|| ||||| || || || || || |||||||||||||| || ||||||||||| ||
Sbjct 726 TTCATCGATTACGGGTATGGCACCGGCCTGAAGTCAGTAGGCGATAACTGGGGCCGAAAC 785
Query 1829 TGGACGCTGATACTGTTCGGCGGCGGAACGGCAGATCCTGAGATGGGTAACAAGCGCGGG 1888
||| |||||||| |||||| |||| | | ||||| |||||| |||||||| ||
Sbjct 786 TGGCAGCTGATACAGTTCGGTAGCGGCTCTACCGATCCGCAGATGGCGAACAAGCGTGGC 845
Query 1889 GAGATGTACAAATCCGCCCGTGATGC---GCTGAAGCTGGGCGCGCAACTTGACAGCCAG 1945
||||||||||| ||| | | | ||||||| |||| ||| || || || |||
Sbjct 846 GAGATGTACAA---CGCGGTTAAGACCTGGCTGAAGGATGGCGGGCAGCTGGATAGTCAG 902
Query 1946 GATTTAGCCGACGAACTCAGCGCGCCTGAGTACAAAGTCAGGCTTAAGGA 1995
||| | || || || || ||| | || ||||| ||| |||| || ||
Sbjct 903 GATGTTGCAGATGAGCTGTCAGCGGCAGAATACAAGGTCCGGCTGAAAGA 952
>seq4088
Length=5036
Score = 96.9 bits (106), Expect = 9e-16
Identities = 70/80 (88%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 3335 TGCCACACTAACGCAGTGGCCTCGGGGCTTTAACGTCTTCCGAGTAGCGACATCACACGC 3394
||||||||| |||||||||| ||||||| |||| |||||||||||| ||||||| | |||
Sbjct 1555 TGCCACACTTACGCAGTGGCTTCGGGGCGTTAAAGTCTTCCGAGTATCGACATCTCCCGC 1496
Query 3395 CGTTTTTATTTCCTCTTTTA 3414
|||| ||| || ||||||||
Sbjct 1495 CGTTATTA-TTGCTCTTTTA 1477
>seq17421
Length=2767
Score = 89.7 bits (98), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 3335 TGCCACACTAACGCAGTGGCCTCGGGGCTTTAACGTCTTCCGAGTAGCGACATCACACGC 3394
|||||||||| ||||||||| ||||||||||| ||||||| ||| ||||||| | | |
Sbjct 2625 TGCCACACTATCGCAGTGGCTTCGGGGCTTTATTGTCTTCC--GTATCGACATCGCTCAC 2682
Query 3395 CGTTTTTATTTCCTCTTTTAGCCCAGCTAATACTTTGCTCATTGCCGAGGATCACACGAC 3454
|||| ||||| | || |||| |||| | || | || |||| |||||||||
Sbjct 2683 CGTTATTATTATTCCCTTAAGCCACACTAAAAAATTAGTGATCGCCGGAACTCACACGAC 2742
Query 3455 TCTGGATT 3462
||||||||
Sbjct 2743 TCTGGATT 2750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133461173797636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |