Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq9716 134 4e-27 seq4088 96.9 9e-16 seq17421 89.7 1e-13 >seq9716 Length=2276 Score = 134 bits (148), Expect = 4e-27 Identities = 109/132 (83%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1107 CAGCGATGTACAGCAACGATCCGGGACACGATAAACGCTGGCGCGCTGACGCTATTCCAT 1166 |||| || |||||||| ||| | | ||||| ||| ||||||||||| || || |||| Sbjct 1 CAGCCATTTACAGCAATGATGCCGCACACGCTAAGTCATGGCGCGCTGATGCCATCCCAT 60 Query 1167 GGTCTGAGCACAACACTGAAGCATTCGCCGGGCTGCACAACGAGCGCAAGCGCATCATCG 1226 |||| ||| ||||||| || || |||||||| |||||||||||||| |||||||||||| Sbjct 61 GGTCAGAGAACAACACCGAGGCGTTCGCCGGCCTGCACAACGAGCGAAAGCGCATCATCC 120 Query 1227 TGGTATTCGACG 1238 || ||||||||| Sbjct 121 TGATATTCGACG 132 Score = 114 bits (126), Expect = 3e-21 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 1769 TTTATCGACTATGGATACGGGACTGGCCTGAAGTCAGTCGGTGATAACTGGGGGCGCTCA 1828 || ||||| || || || || || |||||||||||||| || ||||||||||| || Sbjct 726 TTCATCGATTACGGGTATGGCACCGGCCTGAAGTCAGTAGGCGATAACTGGGGCCGAAAC 785 Query 1829 TGGACGCTGATACTGTTCGGCGGCGGAACGGCAGATCCTGAGATGGGTAACAAGCGCGGG 1888 ||| |||||||| |||||| |||| | | ||||| |||||| |||||||| || Sbjct 786 TGGCAGCTGATACAGTTCGGTAGCGGCTCTACCGATCCGCAGATGGCGAACAAGCGTGGC 845 Query 1889 GAGATGTACAAATCCGCCCGTGATGC---GCTGAAGCTGGGCGCGCAACTTGACAGCCAG 1945 ||||||||||| ||| | | | ||||||| |||| ||| || || || ||| Sbjct 846 GAGATGTACAA---CGCGGTTAAGACCTGGCTGAAGGATGGCGGGCAGCTGGATAGTCAG 902 Query 1946 GATTTAGCCGACGAACTCAGCGCGCCTGAGTACAAAGTCAGGCTTAAGGA 1995 ||| | || || || || ||| | || ||||| ||| |||| || || Sbjct 903 GATGTTGCAGATGAGCTGTCAGCGGCAGAATACAAGGTCCGGCTGAAAGA 952 >seq4088 Length=5036 Score = 96.9 bits (106), Expect = 9e-16 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 3335 TGCCACACTAACGCAGTGGCCTCGGGGCTTTAACGTCTTCCGAGTAGCGACATCACACGC 3394 ||||||||| |||||||||| ||||||| |||| |||||||||||| ||||||| | ||| Sbjct 1555 TGCCACACTTACGCAGTGGCTTCGGGGCGTTAAAGTCTTCCGAGTATCGACATCTCCCGC 1496 Query 3395 CGTTTTTATTTCCTCTTTTA 3414 |||| ||| || |||||||| Sbjct 1495 CGTTATTA-TTGCTCTTTTA 1477 >seq17421 Length=2767 Score = 89.7 bits (98), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 3335 TGCCACACTAACGCAGTGGCCTCGGGGCTTTAACGTCTTCCGAGTAGCGACATCACACGC 3394 |||||||||| ||||||||| ||||||||||| ||||||| ||| ||||||| | | | Sbjct 2625 TGCCACACTATCGCAGTGGCTTCGGGGCTTTATTGTCTTCC--GTATCGACATCGCTCAC 2682 Query 3395 CGTTTTTATTTCCTCTTTTAGCCCAGCTAATACTTTGCTCATTGCCGAGGATCACACGAC 3454 |||| ||||| | || |||| |||| | || | || |||| ||||||||| Sbjct 2683 CGTTATTATTATTCCCTTAAGCCACACTAAAAAATTAGTGATCGCCGGAACTCACACGAC 2742 Query 3455 TCTGGATT 3462 |||||||| Sbjct 2743 TCTGGATT 2750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133461173797636