Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_031085.1
Length=166634
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 143 3e-29
seq2698 109 6e-19
seq2410 84.2 2e-11
>seq2789
Length=15484
Score = 143 bits (158), Expect = 3e-29
Identities = 499/764 (65%), Gaps = 21/764 (3%)
Strand=Plus/Plus
Query 43850 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 43909
||||||||||||||| | || ||| ||| || || || || || || |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 43910 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAAAT 43969
|||||| ||| ||| ||||||| | | | |||||| || || || |
Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250
Query 43970 AGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 44029
| ||| | || || | || || || | ||| | | |||| ||| |||||
Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310
Query 44030 CATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTGTC 44088
| || ||| | || | | | || ||||| || || ||||| || |||||||
Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTC 3369
Query 44089 CGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACAT 44148
| |||| || | |||||| | ||||||||| | |||| || ||||| | ||||
Sbjct 3370 CATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACAT 3428
Query 44149 -CTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCA 44207
||||||| |||| | | |||| || | || | ||| | |||||||||
Sbjct 3429 TCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTT 3488
Query 44208 TCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACA 44264
|| | ||| ||| | || || |||| ||||||| | ||| || | ||| | |
Sbjct 3489 TCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATA 3545
Query 44265 TTCGCAAAAGTCGTTCCGCCATATTGATGGGAAGCAACTTGCGCAGTAATTTGTGCCATA 44324
|| || || ||||| ||||| ||| || |||||||| | ||||| || |
Sbjct 3546 TTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTT 3605
Query 44325 ATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAAT 44384
|| || || || || ||||| ||||||||||| | ||||| || | |||||
Sbjct 3606 ATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAG 3665
Query 44385 CCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAGGG 44444
|| |||||||||||||||||||| ||||| |||||| | ||||| | ||
Sbjct 3666 CCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGT 3725
Query 44445 GAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAAGAC 44504
|||||||| | |||||| ||||||| || ||||||| || ||| | | | | |
Sbjct 3726 GAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTC 3781
Query 44505 ----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCG 44557
|| | || |||||| ||| |||||||| | |||||||| | | || |
Sbjct 3782 TTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCT 3841
Query 44558 TTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 44601
||||||||||| |||| ||||||||||||||| || ||||
Sbjct 3842 TTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
>seq2698
Length=11445
Score = 109 bits (120), Expect = 6e-19
Identities = 134/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 62773 ATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACTGCATATCCGGATACA 62832
||||| || | || ||||| || || | ||||||||| | ||| |||||||| || ||
Sbjct 5478 ATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACAGCATATCCTGAAACC 5419
Query 62833 CGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCTTCCAGAGTTTCACGA 62892
| || || | |||||| |||||||| ||||| | |||||||| || |||||
Sbjct 5418 CTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCAAGAAGTGTTTCTTTT 5359
Query 62893 CGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAATTTTAACTGTAGGCTGTGATTCA 62952
|| ||||||||||| || | ||||| |||||||||| | | || ||||| | ||||
Sbjct 5358 CGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAACTCTTACAGTAGGACTTTCTTCA 5299
Query 62953 ATT 62955
|||
Sbjct 5298 ATT 5296
>seq2410
Length=3205
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/152 (75%), Gaps = 8/152 (5%)
Strand=Plus/Minus
Query 70743 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 70801
|||||||||| | |||| |||||||| | | || ||||||||||||| ||||| |||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 70802 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 70858
| | ||||| |||| | |||| |||| | ||| ||||||| ||||| || |
Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911
Query 70859 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 70889
|| ||| |||||||||| || ||||||||||
Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 532893896915760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |