Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq2789 122 9e-23 seq2698 113 5e-20 >seq2789 Length=15484 Score = 122 bits (134), Expect = 9e-23 Identities = 494/765 (65%), Gaps = 25/765 (3%) Strand=Plus/Plus Query 40881 ATATCAGGATACATACGCTTAGCTGCGCATTCTAATGCAAGCTGCTTAATATCATAGTTC 40940 |||||||||||||| || | | || ||||| | || || || || |||||||| || Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191 Query 40941 GGGTCTTCTTTGCGTAGATTAATGCCTTCTTCTA---CAAACATCACAAGCTTTGGAAAG 40997 || || || | ||| | ||||||| || |||| | |||| |||||||| Sbjct 3192 GGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAA---CAAGTTTTGGAAAT 3248 Query 40998 ATTGGAGTAATTCCATCGCGTCCTAATCCACGAATAC-GATTATCAAGAATAGCTCGTTG 41056 | || || || || |||||| ||| || | | || | || | | | | ||| Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATT-GATTTTTG 3307 Query 41057 AATTAATTTTTCTTCCCATGACGTGCCCATACCAAATGTGATAGTCACAAACGGAGTTTG 41116 ||||||| |||| || || | || | ||||| | ||| ||||| || ||||| Sbjct 3308 AATTAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTG 3367 Query 41117 GCCATTTGAACTGAACAAAGTATTCACTTCATATTCATACGCCTGGAAAGCATCAAATAC 41176 ||||||| | ||||||||| | ||||||||| | | || ||||||||||| || Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426 Query 41177 AT-CTTTTTCTGTTTTTGAAATAGCATAATCTTTT--ACTAATGCTACCTGATATTTGCG 41233 || ||||||| ||||| | || |||| | | | | | | || | |||||| Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATA--TTATATTTTTC 3484 Query 41234 AGCATC---ACGTACGTGTTTAGCGAATGTCTTCTCTACATAAGGAGCCAGAACTAAATC 41290 | || | || | | | | | | || ||||||||| || | || | ||| Sbjct 3485 TGTTTCTTTAATTAACTTTATTTCAGAAGCTTT---TACATAAGGGGCTAAAATAATATC 3541 Query 41291 AACATTAGCAAAGGTAGTTCCACCATATTGGTGAGATGCTACCTGTGCAGTGATTTGCGC 41350 | ||| || || ||||||||||| ||| ||| || || || | ||||| || Sbjct 3542 GATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGC 3601 Query 41351 CATAATAGCAGTAGCTACTCCAATACTCTTAGGAGTTTCAATTTGAGCGTTACCAAGTTT 41410 | ||||| || ||| |||||| ||||||||||||| ||| || || | ||| Sbjct 3602 AGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTT 3661 Query 41411 AAAGCCATTCTGCAA-CATACCTTTCAAATCTACCAAACAGCAGTTGGTGAAAGGCAAAG 41469 ||||||| || ||| ||| ||||| ||||| || || || || | || ||| Sbjct 3662 AAAGCCA-CCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAA 3720 Query 41470 CTGGACTGTAGTCCATATCATGAAAATGGATAACACCTTCTTTGTGCGCTTCCATTACAG 41529 ||| || || | ||||||| |||| || |||||| || || || || | ||| Sbjct 3721 ATGGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGCGTCAACTACGT 3780 Query 41530 AGAAAGGAATGACCTGA---TTGGCGATATGTTTAGATACGATACCAGCCATCAGGTCAC 41586 |||| | ||| || || ||||||||| | |||||||| | || || | Sbjct 3781 CTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTC 3840 Query 41587 GTTGGGTAGGAAAAACACGAGAATCTTTGTTAGCATTCTCGTTTA 41631 ||| || |||| |||| |||||| |||||||| || |||| Sbjct 3841 TTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 >seq2698 Length=11445 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 59989 ATTATAGTGCCTCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGG 60048 |||||| || | ||||||||| | || ||||| || | || ||||| ||||| | | Sbjct 5507 ATTATATTGATTTTGTGAAAGTTCTGGTAATAACATCTTGTTGTTGTTCAGGTGTTAAAG 5448 Query 60049 AGTTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGAT 60108 ||||||| | || || || || ||||| | ||| || | ||||||||||||||| |||| Sbjct 5447 AGTTAAATCTAACAGCATATCCTGAAACCCTAATTGTTAACTGCGGGTATTTTTCAGGAT 5388 Query 60109 GCTCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGC 60168 | || || || || || || ||||| || || ||||| || || | || || || | Sbjct 5387 GTTCTACTGCATCAAGAAGTGTTTCTTTTCGAAGAACGTTTACATTTAAATGTTGTCCAC 5328 Query 60169 CTTCAATTTTTACCGTTGGCTGGTATTCAATT 60200 |||||| | |||| || || | ||||||| Sbjct 5327 CTTCAACTCTTACAGTAGGACTTTCTTCAATT 5296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538133462585280