Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_031087.1
Length=168272
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 122 9e-23
seq2698 113 5e-20
>seq2789
Length=15484
Score = 122 bits (134), Expect = 9e-23
Identities = 494/765 (65%), Gaps = 25/765 (3%)
Strand=Plus/Plus
Query 40881 ATATCAGGATACATACGCTTAGCTGCGCATTCTAATGCAAGCTGCTTAATATCATAGTTC 40940
|||||||||||||| || | | || ||||| | || || || || |||||||| ||
Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191
Query 40941 GGGTCTTCTTTGCGTAGATTAATGCCTTCTTCTA---CAAACATCACAAGCTTTGGAAAG 40997
|| || || | ||| | ||||||| || |||| | |||| ||||||||
Sbjct 3192 GGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAA---CAAGTTTTGGAAAT 3248
Query 40998 ATTGGAGTAATTCCATCGCGTCCTAATCCACGAATAC-GATTATCAAGAATAGCTCGTTG 41056
| || || || || |||||| ||| || | | || | || | | | | |||
Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATT-GATTTTTG 3307
Query 41057 AATTAATTTTTCTTCCCATGACGTGCCCATACCAAATGTGATAGTCACAAACGGAGTTTG 41116
||||||| |||| || || | || | ||||| | ||| ||||| || |||||
Sbjct 3308 AATTAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTG 3367
Query 41117 GCCATTTGAACTGAACAAAGTATTCACTTCATATTCATACGCCTGGAAAGCATCAAATAC 41176
||||||| | ||||||||| | ||||||||| | | || ||||||||||| ||
Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426
Query 41177 AT-CTTTTTCTGTTTTTGAAATAGCATAATCTTTT--ACTAATGCTACCTGATATTTGCG 41233
|| ||||||| ||||| | || |||| | | | | | | || | ||||||
Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATA--TTATATTTTTC 3484
Query 41234 AGCATC---ACGTACGTGTTTAGCGAATGTCTTCTCTACATAAGGAGCCAGAACTAAATC 41290
| || | || | | | | | | || ||||||||| || | || | |||
Sbjct 3485 TGTTTCTTTAATTAACTTTATTTCAGAAGCTTT---TACATAAGGGGCTAAAATAATATC 3541
Query 41291 AACATTAGCAAAGGTAGTTCCACCATATTGGTGAGATGCTACCTGTGCAGTGATTTGCGC 41350
| ||| || || ||||||||||| ||| ||| || || || | ||||| ||
Sbjct 3542 GATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGC 3601
Query 41351 CATAATAGCAGTAGCTACTCCAATACTCTTAGGAGTTTCAATTTGAGCGTTACCAAGTTT 41410
| ||||| || ||| |||||| ||||||||||||| ||| || || | |||
Sbjct 3602 AGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTT 3661
Query 41411 AAAGCCATTCTGCAA-CATACCTTTCAAATCTACCAAACAGCAGTTGGTGAAAGGCAAAG 41469
||||||| || ||| ||| ||||| ||||| || || || || | || |||
Sbjct 3662 AAAGCCA-CCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAA 3720
Query 41470 CTGGACTGTAGTCCATATCATGAAAATGGATAACACCTTCTTTGTGCGCTTCCATTACAG 41529
||| || || | ||||||| |||| || |||||| || || || || | |||
Sbjct 3721 ATGGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGCGTCAACTACGT 3780
Query 41530 AGAAAGGAATGACCTGA---TTGGCGATATGTTTAGATACGATACCAGCCATCAGGTCAC 41586
|||| | ||| || || ||||||||| | |||||||| | || || |
Sbjct 3781 CTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTC 3840
Query 41587 GTTGGGTAGGAAAAACACGAGAATCTTTGTTAGCATTCTCGTTTA 41631
||| || |||| |||| |||||| |||||||| || ||||
Sbjct 3841 TTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
>seq2698
Length=11445
Score = 113 bits (124), Expect = 5e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 59989 ATTATAGTGCCTCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGG 60048
|||||| || | ||||||||| | || ||||| || | || ||||| ||||| | |
Sbjct 5507 ATTATATTGATTTTGTGAAAGTTCTGGTAATAACATCTTGTTGTTGTTCAGGTGTTAAAG 5448
Query 60049 AGTTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGAT 60108
||||||| | || || || || ||||| | ||| || | ||||||||||||||| ||||
Sbjct 5447 AGTTAAATCTAACAGCATATCCTGAAACCCTAATTGTTAACTGCGGGTATTTTTCAGGAT 5388
Query 60109 GCTCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGC 60168
| || || || || || || ||||| || || ||||| || || | || || || |
Sbjct 5387 GTTCTACTGCATCAAGAAGTGTTTCTTTTCGAAGAACGTTTACATTTAAATGTTGTCCAC 5328
Query 60169 CTTCAATTTTTACCGTTGGCTGGTATTCAATT 60200
|||||| | |||| || || | |||||||
Sbjct 5327 CTTCAACTCTTACAGTAGGACTTTCTTCAATT 5296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 538133462585280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |