Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_031095.1
Length=168758
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 138 1e-27
seq2698 104 3e-17
>seq2789
Length=15484
Score = 138 bits (152), Expect = 1e-27
Identities = 495/762 (65%), Gaps = 19/762 (2%)
Strand=Plus/Minus
Query 66317 TAAACGAGAATGCTAACAAAGATTCTCGTGTTTTTCCTACCCAACGTGACCTGATGGCTG 66376
|||| || |||||||| |||||| |||| |||| || ||| | || || | ||||
Sbjct 3885 TAAATGAAAATGCTAATAAAGATAGCAATGTTATTCCAACTCAAAGAGATTTGTTAGCTG 3826
Query 66377 GTATCGTATCTAAACATATCGCCAA---TCAGGTCATTCCTTTCTCTGTAATGGAAGCAC 66433
|||| | ||||||||| || || ||| | |||| ||| | || || |
Sbjct 3825 GTATAATTTCTAAACATTATGCTAAAAATCATATACTTCCCAAAGACGTAGTTGACGCTC 3766
Query 66434 ACAAAGAAGGTGTTATCCATTTTCATGATATGGACTATAGTCCAGCTTTGCCTTTCACCA 66493
| || |||||| || |||| ||||||| | || ||| ||| ||| || | |
Sbjct 3765 ATGAAAAAGGTGAAATTCATTATCATGATTTAGATTATTCACCATTTTTTCCAATGTTTA 3706
Query 66494 ACTGCTGTTTGGTAGATTTGAAGGGTATG-TTGCAGAATGGTTTTAAACTTGGTAACGCT 66552
| || || || ||||| || || ||| ||| || ||| |||||| | || || |||
Sbjct 3705 ATTGTATGTTAGTTGATTTAAAAGGAATGCTTGAAGG-TGGCTTTAAAATAGGAAATGCT 3647
Query 66553 CAAATTGAAACTCCTAAGAGTATTGGAGTAGCTACTGCTATCATGGCGCAAATCACTGCG 66612
||||||||||||| |||||| ||| || ||||| | || ||||| | |||
Sbjct 3646 GAAATTGAAACTCCACGTTCAATTGGAACAGCAACGGCTATAACTGCTCAAATAATAGCG 3587
Query 66613 CAAGTAGCATCTCACCAGTATGGTGGAACTACGTTTGCTAACGTCGATTTAGTATTGGCT 66672
||||| ||| ||| ||||||||||| ||| || || ||||| | | || ||
Sbjct 3586 CAAGTCGCAAGTCATACTTATGGTGGAACAACGATTAACAATATCGATATTATTTTAGCC 3527
Query 66673 CCTTATGTGGAGAAGACATTCGCTAAACACGTACGTGATG-CTCGCAAATATCAAGTAGC 66731
|||||||| | ||| | | | | | | || | | | | ||| || | || |
Sbjct 3526 CCTTATGT--AAAAG-CTTCTGAAATAAAGTTAATTAAAGAAACAGAAAAATATAATATC 3470
Query 66732 ATTAGT--AAAAGATTATGCTATTTCAAAAACAGAAAAAGACGTATTTGATGCTTTCCAG 66789
| | | | | |||| || | ||||| |||||||| ||||||||||| ||
Sbjct 3469 CCCAATCCAGATAAATATGTTAATGAAAAAATTGAAAAAGAATGTTTTGATGCTTTTCAA 3410
Query 66790 GCGTATGAATATGAAGTGAATACTTTGTTCAGTTCAAATGGCCAAACTCCGTTTGTGACT 66849
| | ||||||||| | ||||||||| | ||||||| ||||| || ||||| |||
Sbjct 3409 GGATTAGAATATGAAATTAATACTTTGCATACCGCAAATGGACAAACCCCATTTGTTACT 3350
Query 66850 ATCACATTTGGTATGGGAACGTCATGGGAAGAAAAATTAATTCAACGAGCTATTCTTGAT 66909
| ||||| | |||| || || |||| |||||||||| | | | | || |
Sbjct 3349 TTTGGTTTTGGACTTGGAATTACAAAAGAGGAAAGATTAATTCAAAAATC-AATATTAAG 3291
Query 66910 AATC-GTATTCGTGGATTAGGACGTGATGGAATTACTCCAATCTTTCCAAAGCTTGTGAT 66968
|| | | || ||| |||||| || || || || | |||||||| |||| |
Sbjct 3290 AAACAGAATAAATGGGTTAGGAAAAAATAAAAAAACGGCAGTATTTCCAAAACTTG---T 3234
Query 66969 GTTTG---TAGAAGAAGGCATTAATCTACGTAAAGAAGACCCGAACTATGATATTAAGCA 67025
|||| || ||||||| | ||| | ||| || || || |||||||| || ||
Sbjct 3233 TTTTGCCATAAAAGAAGGGACAAATAGAATTAATAGCGATCCTAATTATGATATAAAACA 3174
Query 67026 GCTTGCATTAGAATGCGCAGCTAAGCGTATGTATCCTGATAT 67067
|| || | ||||| || | | || ||||||||||||||
Sbjct 3173 ACTGGCGCTTGAATGTTCAACACAACGAATGTATCCTGATAT 3132
>seq2698
Length=11445
Score = 104 bits (114), Expect = 3e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 47277 AATTGAATACCAGCCAACGGTAAAAATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTT 47336
||||||| | || || |||| | ||||||| || || || | || || ||||| |
Sbjct 5296 AATTGAAGAAAGTCCTACTGTAAGAGTTGAAGGTGGACAACATTTAAATGTAAACGTTCT 5355
Query 47337 GCGTCGCGAAACCTTGCTGGATGCGGTTGAGCACCCAGAAAAATACCCGCAGCTGACTAT 47396
|| ||||| | || ||||| || || || || ||||||||||||||| | || ||
Sbjct 5356 TCGAAAAGAAACACTTCTTGATGCAGTAGAACATCCTGAAAAATACCCGCAGTTAACAAT 5415
Query 47397 TCGCGTTTCCGGATACGCGGTGCGCTTCAACTCCTTGACACCAGAACAGCAGCGCGACGT 47456
| | ||||| ||||| || || | || ||||| || ||||| ||||| || | || ||
Sbjct 5416 TAGGGTTTCAGGATATGCTGTTAGATTTAACTCTTTAACACCTGAACAACAACAAGATGT 5475
Query 47457 TATCGCTCGTACTTTCACAGAGGCACTATAAT 47488
||| | | ||||||||| | || ||||||
Sbjct 5476 TATTACCAGAACTTTCACAAAATCAATATAAT 5507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 539688058992720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |