Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq2789 138 1e-27 seq2698 104 3e-17 >seq2789 Length=15484 Score = 138 bits (152), Expect = 1e-27 Identities = 495/762 (65%), Gaps = 19/762 (2%) Strand=Plus/Minus Query 66317 TAAACGAGAATGCTAACAAAGATTCTCGTGTTTTTCCTACCCAACGTGACCTGATGGCTG 66376 |||| || |||||||| |||||| |||| |||| || ||| | || || | |||| Sbjct 3885 TAAATGAAAATGCTAATAAAGATAGCAATGTTATTCCAACTCAAAGAGATTTGTTAGCTG 3826 Query 66377 GTATCGTATCTAAACATATCGCCAA---TCAGGTCATTCCTTTCTCTGTAATGGAAGCAC 66433 |||| | ||||||||| || || ||| | |||| ||| | || || | Sbjct 3825 GTATAATTTCTAAACATTATGCTAAAAATCATATACTTCCCAAAGACGTAGTTGACGCTC 3766 Query 66434 ACAAAGAAGGTGTTATCCATTTTCATGATATGGACTATAGTCCAGCTTTGCCTTTCACCA 66493 | || |||||| || |||| ||||||| | || ||| ||| ||| || | | Sbjct 3765 ATGAAAAAGGTGAAATTCATTATCATGATTTAGATTATTCACCATTTTTTCCAATGTTTA 3706 Query 66494 ACTGCTGTTTGGTAGATTTGAAGGGTATG-TTGCAGAATGGTTTTAAACTTGGTAACGCT 66552 | || || || ||||| || || ||| ||| || ||| |||||| | || || ||| Sbjct 3705 ATTGTATGTTAGTTGATTTAAAAGGAATGCTTGAAGG-TGGCTTTAAAATAGGAAATGCT 3647 Query 66553 CAAATTGAAACTCCTAAGAGTATTGGAGTAGCTACTGCTATCATGGCGCAAATCACTGCG 66612 ||||||||||||| |||||| ||| || ||||| | || ||||| | ||| Sbjct 3646 GAAATTGAAACTCCACGTTCAATTGGAACAGCAACGGCTATAACTGCTCAAATAATAGCG 3587 Query 66613 CAAGTAGCATCTCACCAGTATGGTGGAACTACGTTTGCTAACGTCGATTTAGTATTGGCT 66672 ||||| ||| ||| ||||||||||| ||| || || ||||| | | || || Sbjct 3586 CAAGTCGCAAGTCATACTTATGGTGGAACAACGATTAACAATATCGATATTATTTTAGCC 3527 Query 66673 CCTTATGTGGAGAAGACATTCGCTAAACACGTACGTGATG-CTCGCAAATATCAAGTAGC 66731 |||||||| | ||| | | | | | | || | | | | ||| || | || | Sbjct 3526 CCTTATGT--AAAAG-CTTCTGAAATAAAGTTAATTAAAGAAACAGAAAAATATAATATC 3470 Query 66732 ATTAGT--AAAAGATTATGCTATTTCAAAAACAGAAAAAGACGTATTTGATGCTTTCCAG 66789 | | | | | |||| || | ||||| |||||||| ||||||||||| || Sbjct 3469 CCCAATCCAGATAAATATGTTAATGAAAAAATTGAAAAAGAATGTTTTGATGCTTTTCAA 3410 Query 66790 GCGTATGAATATGAAGTGAATACTTTGTTCAGTTCAAATGGCCAAACTCCGTTTGTGACT 66849 | | ||||||||| | ||||||||| | ||||||| ||||| || ||||| ||| Sbjct 3409 GGATTAGAATATGAAATTAATACTTTGCATACCGCAAATGGACAAACCCCATTTGTTACT 3350 Query 66850 ATCACATTTGGTATGGGAACGTCATGGGAAGAAAAATTAATTCAACGAGCTATTCTTGAT 66909 | ||||| | |||| || || |||| |||||||||| | | | | || | Sbjct 3349 TTTGGTTTTGGACTTGGAATTACAAAAGAGGAAAGATTAATTCAAAAATC-AATATTAAG 3291 Query 66910 AATC-GTATTCGTGGATTAGGACGTGATGGAATTACTCCAATCTTTCCAAAGCTTGTGAT 66968 || | | || ||| |||||| || || || || | |||||||| |||| | Sbjct 3290 AAACAGAATAAATGGGTTAGGAAAAAATAAAAAAACGGCAGTATTTCCAAAACTTG---T 3234 Query 66969 GTTTG---TAGAAGAAGGCATTAATCTACGTAAAGAAGACCCGAACTATGATATTAAGCA 67025 |||| || ||||||| | ||| | ||| || || || |||||||| || || Sbjct 3233 TTTTGCCATAAAAGAAGGGACAAATAGAATTAATAGCGATCCTAATTATGATATAAAACA 3174 Query 67026 GCTTGCATTAGAATGCGCAGCTAAGCGTATGTATCCTGATAT 67067 || || | ||||| || | | || |||||||||||||| Sbjct 3173 ACTGGCGCTTGAATGTTCAACACAACGAATGTATCCTGATAT 3132 >seq2698 Length=11445 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 47277 AATTGAATACCAGCCAACGGTAAAAATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTT 47336 ||||||| | || || |||| | ||||||| || || || | || || ||||| | Sbjct 5296 AATTGAAGAAAGTCCTACTGTAAGAGTTGAAGGTGGACAACATTTAAATGTAAACGTTCT 5355 Query 47337 GCGTCGCGAAACCTTGCTGGATGCGGTTGAGCACCCAGAAAAATACCCGCAGCTGACTAT 47396 || ||||| | || ||||| || || || || ||||||||||||||| | || || Sbjct 5356 TCGAAAAGAAACACTTCTTGATGCAGTAGAACATCCTGAAAAATACCCGCAGTTAACAAT 5415 Query 47397 TCGCGTTTCCGGATACGCGGTGCGCTTCAACTCCTTGACACCAGAACAGCAGCGCGACGT 47456 | | ||||| ||||| || || | || ||||| || ||||| ||||| || | || || Sbjct 5416 TAGGGTTTCAGGATATGCTGTTAGATTTAACTCTTTAACACCTGAACAACAACAAGATGT 5475 Query 47457 TATCGCTCGTACTTTCACAGAGGCACTATAAT 47488 ||| | | ||||||||| | || |||||| Sbjct 5476 TATTACCAGAACTTTCACAAAATCAATATAAT 5507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539688058992720