Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_031103.1
Length=165772
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 136 4e-27
seq2410 84.2 2e-11
>seq2789
Length=15484
Score = 136 bits (150), Expect = 4e-27
Identities = 495/763 (65%), Gaps = 19/763 (2%)
Strand=Plus/Plus
Query 41851 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGTTTAATATCATAGTT 41910
||||||||||||||| | || ||| ||| || || || || ||||| |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 41911 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAAAT 41970
|||||| ||| ||| ||||||| | | | |||||| || || || |
Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250
Query 41971 AGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 42030
| ||| | || || | || || || | ||| | | |||| ||| |||||
Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310
Query 42031 CATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTGTC 42089
| || ||| | || | | | || ||||| || || ||||| || |||||||
Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTC 3369
Query 42090 CGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGT 42149
| |||| || | |||||| | ||||||||| | |||| || ||||| | |
Sbjct 3370 CATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACATT 3429
Query 42150 CTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCAT 42209
||||||| |||| | | |||| || | || | ||| | ||||||||| |
Sbjct 3430 CTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTT 3489
Query 42210 CCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACAT 42266
| | ||| ||| | || || |||| ||||||| | ||| || | ||| | ||
Sbjct 3490 CTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATAT 3546
Query 42267 TCGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAA 42326
| || || ||||| || || ||| || || || || | ||||| || | |
Sbjct 3547 TGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTA 3606
Query 42327 TTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATC 42386
| || || || || ||||| ||||||||||| | ||||| || | ||||| |
Sbjct 3607 TAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGC 3666
Query 42387 CATTCTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAGGGG 42446
|| |||||||||||||||||||| ||||| ||||||| | ||||| | || |
Sbjct 3667 CACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTG 3726
Query 42447 AATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAAGAC- 42505
||||||| | |||||| ||||||| || ||||||| || ||| | | | | |
Sbjct 3727 AATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCT 3782
Query 42506 ---GGGACCAT---ATTTTTGGCAATGTGCTTAGACACAATACCAGCCATAAGGTCCCGT 42559
|| | || |||||| ||| || ||||| | |||||||| | | || | |
Sbjct 3783 TTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTT 3842
Query 42560 TGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42602
|||||||||| |||| ||||||||||||||| || ||||
Sbjct 3843 TGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
>seq2410
Length=3205
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/152 (75%), Gaps = 8/152 (5%)
Strand=Plus/Minus
Query 70068 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 70126
|||||||||| | |||| |||||||| | | || ||||||||||||| ||||| |||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 70127 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 70183
| | ||||| |||| | |||| |||| | ||| ||||||| ||||| || |
Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911
Query 70184 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 70214
|| ||| |||||||||| || ||||||||||
Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530136567485280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |