Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq4032 104 4e-17 seq1262 96.9 5e-15 seq12975 87.8 3e-12 >seq4032 Length=2654 Score = 104 bits (114), Expect = 4e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5484 AGACTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAG 5543 |||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1297 AGACCTTTTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAG 1356 Query 5544 TCCTGCCAGAGTCGCCACAT 5563 || ||| | ||||||| || Sbjct 1357 TCTTGCATGGGTCGCCAAAT 1376 Score = 104 bits (114), Expect = 4e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5484 AGACTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAG 5543 |||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1560 AGACCTTTTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAG 1619 Query 5544 TCCTGCCAGAGTCGCCACAT 5563 || ||| | ||||||| || Sbjct 1620 TCTTGCATGGGTCGCCAAAT 1639 >seq1262 Length=72559 Score = 96.9 bits (106), Expect = 5e-15 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 5492 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 5549 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 60811 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCTGGTTCGAGTCCAGC 60754 >seq12975 Length=3907 Score = 87.8 bits (96), Expect = 3e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 5505 AGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGCCAGAGTCGCCA 5560 |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 3907 AGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAATCCTGCATGAGTCGCCA 3852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770008234146840