Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq17985 242 2e-59 seq31045 134 9e-27 seq16447 100 2e-16 seq10554 93.3 3e-14 seq1262 84.2 1e-11 >seq17985 Length=3756 Score = 242 bits (268), Expect = 2e-59 Identities = 317/439 (72%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 5546 ATGCGATGTCAATTCAGAACATCATTGACATATATGAACATCGCGGAGTGCCAAAATACC 5605 |||| ||| || |||||||||||||| ||||| | ||| | || || |||||||||| Sbjct 1087 ATGCCATGAATATCCAGAACATCATTGATATATACCATCATAGGGGGGTTCCAAAATACC 1028 Query 5606 GGGATCGCTACAGCGAAGCGTATGTGATTTTCATCTCTAATCTTAAAGGCGGTGTGTCAA 5665 | || | | ||||||| | | || || ||||| ||||| ||||| || | Sbjct 1027 GTGACAGGCATTCTGAAGCGTTAACGGTATTTGTCGGGAATCTCAAAGGGGGTGTATCGA 968 Query 5666 AAACTGTATCGACGGTTTCTCTGGCGCATGCAATGCGTGCTCACCCTCATCTTCTGATGG 5725 | || || || || || || ||||| |||| ||||||||||| || |||||||| | | Sbjct 967 AGACCGTTTCAACCGTCTCCCTGGCTCATGGTATGCGTGCTCATCCACATCTTCTTTTTG 908 Query 5726 AAGATTTAAGGATTCTGGTTATTGACCTTGATCCGCAATCTTCAGCAACGATGTTTTTAA 5785 | ||| | | || |||||| | || ||||| || || ||||| |||||||||||| | | Sbjct 907 AGGATCTGCGCATCCTGGTTGTGGATCTTGACCCACAGTCTTCTGCAACGATGTTTCTTA 848 Query 5786 GCCATAAACACTCTATTGGTATCGTAAACGCAACATCTGCACAGGCTATGTTGCAGAATG 5845 || | | | ||||| ||| | |||| ||||||||||| ||| | ||||||| Sbjct 847 ATCACACCAGAGCCGTGGGTATGGTAGAGACAACCTCTGCACAGGCAATGCTCCAGAATG 788 Query 5846 TAAGCCGTGAAGAGCTGTTAGAGGAGTTTATTGTTCCTTCTGTTGTACCTGGGGTTGACG 5905 | |||||||||||| || | |||||| | || | || |||||||| || ||||| | Sbjct 787 TGTCCCGTGAAGAGCTTTTGAATGAGTTTGTAGTGCAGTCCGTTGTACCCGGTGTTGATG 728 Query 5906 TTATGCCTGCGTCGATTGACGATGCCTTTATTGCATCCGATTGGAGAGAGCTGTGCAATG 5965 |||| ||||| || || || ||||| ||||| ||||| | ||| || ||||||| | Sbjct 727 TTATCCCTGCCTCAATCGATGATGCGTTTATCGCATCAGGATGGGGATCGCTGTGCCGCG 668 Query 5966 AGCATCTACCGGGTCAGAA 5984 | ||||| ||||| ||||| Sbjct 667 AACATCTCCCGGGCCAGAA 649 >seq31045 Length=6866 Score = 134 bits (148), Expect = 9e-27 Identities = 241/351 (69%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 58699 CGTGTTCCACAGCACGATAGCCGCCGTCACCAG---GTTGAGGCCGCTGGCCCGGTAGCG 58755 ||| ||||| || |||| |||| | |||||| ||| | || ||||| || Sbjct 6585 CGTATTCCATAG---GATAACCGCTGCCACCAGCAGGTTTAAACCTGACGCCCGATAAGC 6529 Query 58756 CTGCTGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCCTGGC 58815 ||| | || || | |||||||| | ||| ||||| |||||||||| | ||||| || Sbjct 6528 CTGATTTTCAAAACGCCGATCCCGCAGTTCACCAAGCTGGTTGAAGAAGAGCGCCCGAGC 6469 Query 58816 CAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAAC 58875 ||||| || || || || || ||||| || || || || || | ||||| || | Sbjct 6468 CAGCGTATTCCGGGCTTCTCCCTTGTTGAGCCCTGCCTGGGTTCGCCTGCGCAAATCCAG 6409 Query 58876 ACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGGGC 58935 | || | |||||| || ||||| | || |||||||||||||| | || |||| ||| Sbjct 6408 ATCCTGTATCCAGTCGAGCATGAAAACCGACCGCTCGATCCGGCCAACTTCACGCAAGGC 6349 Query 58936 CACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAGCGAGGCGGT 58995 || ||||| || ||||| || || || |||||||| |||||||| ||| || || Sbjct 6348 AACAGCCAGACCATTCTGACGGGGATAAGATCCGAGCTTCCGCAGCATAGCCGAAGCCGT 6289 Query 58996 GACGGTGCCCTGCTTGATCGAGCTGGCCAGGCGCAGGATGTCGTCCCAGTG 59046 ||||| || | || || | | || ||||| | ||||||||||| Sbjct 6288 CACGGTTCCACTCCGAATGGATGTAACGAGACGCAGCAGATCGTCCCAGTG 6238 >seq16447 Length=7791 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6227 CTAACATTGGTTTTATGTCCAAGTTGAGTAACAAGGCAGACCATAAGTATTGCCATAGCC 6286 |||||||||| || ||||| ||| || || || || || || || || || |||| Sbjct 7779 CTAACATTGGCTTCATGTCAAAGCTGTCCAATAAAGCTGATCACAAAATGTGTCACAGCC 7720 Query 6287 TGGCTAAAGAAGTGTTCGGTGGGGATATGCTTGATGTTGTCCTCCCTCGCCTTGACGGTT 6346 |||||||||| | || || || || |||||||||| | || || || ||||| |||| Sbjct 7719 TGGCTAAAGAGATATTTGGCGGTGACATGCTTGATGCAGCTCTTCCGCGTCTTGATGGTT 7660 Query 6347 TTGAACGCTGCGGCGAGTCTTTTGA 6371 ||||||| ||||| ||||| ||||| Sbjct 7659 TTGAACGGTGCGGAGAGTCCTTTGA 7635 >seq10554 Length=1538 Score = 93.3 bits (102), Expect = 3e-14 Identities = 77/90 (86%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 38283 CTGAATCATTTCGGAGGGTTCCTGCTTCAACGGGCGGTCTGACTGCACCAT-CCCTCCAC 38341 ||||||||| |||| |||||||||||||| |||| || || | ||||| || |||||||| Sbjct 770 CTGAATCATCTCGGTGGGTTCCTGCTTCATCGGGAGG-CTAAATGCACTATCCCCTCCAC 712 Query 38342 AGGCA-AGCACGGCGTGCCCCGCCGCTAAA 38370 ||||| | |||||| ||||| ||||||||| Sbjct 711 AGGCACAACACGGCATGCCCTGCCGCTAAA 682 >seq1262 Length=72559 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 98316 TGGTGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACC 98375 ||||||||||| | ||||||||||| | |||| ||||||||||||| ||||||||| Sbjct 63818 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACC 63877 Query 98376 -ACTGAGCTAAAGGGCCG 98392 |||||||||| |||||| Sbjct 63878 AACTGAGCTAAGGGGCCG 63895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330773984537134