Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_031129.1
Length=103445
Score E
Sequences producing significant alignments: (Bits) Value
seq17985 242 2e-59
seq31045 134 9e-27
seq16447 100 2e-16
seq10554 93.3 3e-14
seq1262 84.2 1e-11
>seq17985
Length=3756
Score = 242 bits (268), Expect = 2e-59
Identities = 317/439 (72%), Gaps = 0/439 (0%)
Strand=Plus/Minus
Query 5546 ATGCGATGTCAATTCAGAACATCATTGACATATATGAACATCGCGGAGTGCCAAAATACC 5605
|||| ||| || |||||||||||||| ||||| | ||| | || || ||||||||||
Sbjct 1087 ATGCCATGAATATCCAGAACATCATTGATATATACCATCATAGGGGGGTTCCAAAATACC 1028
Query 5606 GGGATCGCTACAGCGAAGCGTATGTGATTTTCATCTCTAATCTTAAAGGCGGTGTGTCAA 5665
| || | | ||||||| | | || || ||||| ||||| ||||| || |
Sbjct 1027 GTGACAGGCATTCTGAAGCGTTAACGGTATTTGTCGGGAATCTCAAAGGGGGTGTATCGA 968
Query 5666 AAACTGTATCGACGGTTTCTCTGGCGCATGCAATGCGTGCTCACCCTCATCTTCTGATGG 5725
| || || || || || || ||||| |||| ||||||||||| || |||||||| | |
Sbjct 967 AGACCGTTTCAACCGTCTCCCTGGCTCATGGTATGCGTGCTCATCCACATCTTCTTTTTG 908
Query 5726 AAGATTTAAGGATTCTGGTTATTGACCTTGATCCGCAATCTTCAGCAACGATGTTTTTAA 5785
| ||| | | || |||||| | || ||||| || || ||||| |||||||||||| | |
Sbjct 907 AGGATCTGCGCATCCTGGTTGTGGATCTTGACCCACAGTCTTCTGCAACGATGTTTCTTA 848
Query 5786 GCCATAAACACTCTATTGGTATCGTAAACGCAACATCTGCACAGGCTATGTTGCAGAATG 5845
|| | | | ||||| ||| | |||| ||||||||||| ||| | |||||||
Sbjct 847 ATCACACCAGAGCCGTGGGTATGGTAGAGACAACCTCTGCACAGGCAATGCTCCAGAATG 788
Query 5846 TAAGCCGTGAAGAGCTGTTAGAGGAGTTTATTGTTCCTTCTGTTGTACCTGGGGTTGACG 5905
| |||||||||||| || | |||||| | || | || |||||||| || ||||| |
Sbjct 787 TGTCCCGTGAAGAGCTTTTGAATGAGTTTGTAGTGCAGTCCGTTGTACCCGGTGTTGATG 728
Query 5906 TTATGCCTGCGTCGATTGACGATGCCTTTATTGCATCCGATTGGAGAGAGCTGTGCAATG 5965
|||| ||||| || || || ||||| ||||| ||||| | ||| || ||||||| |
Sbjct 727 TTATCCCTGCCTCAATCGATGATGCGTTTATCGCATCAGGATGGGGATCGCTGTGCCGCG 668
Query 5966 AGCATCTACCGGGTCAGAA 5984
| ||||| ||||| |||||
Sbjct 667 AACATCTCCCGGGCCAGAA 649
>seq31045
Length=6866
Score = 134 bits (148), Expect = 9e-27
Identities = 241/351 (69%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 58699 CGTGTTCCACAGCACGATAGCCGCCGTCACCAG---GTTGAGGCCGCTGGCCCGGTAGCG 58755
||| ||||| || |||| |||| | |||||| ||| | || ||||| ||
Sbjct 6585 CGTATTCCATAG---GATAACCGCTGCCACCAGCAGGTTTAAACCTGACGCCCGATAAGC 6529
Query 58756 CTGCTGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCCTGGC 58815
||| | || || | |||||||| | ||| ||||| |||||||||| | ||||| ||
Sbjct 6528 CTGATTTTCAAAACGCCGATCCCGCAGTTCACCAAGCTGGTTGAAGAAGAGCGCCCGAGC 6469
Query 58816 CAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAAC 58875
||||| || || || || || ||||| || || || || || | ||||| || |
Sbjct 6468 CAGCGTATTCCGGGCTTCTCCCTTGTTGAGCCCTGCCTGGGTTCGCCTGCGCAAATCCAG 6409
Query 58876 ACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGGGC 58935
| || | |||||| || ||||| | || |||||||||||||| | || |||| |||
Sbjct 6408 ATCCTGTATCCAGTCGAGCATGAAAACCGACCGCTCGATCCGGCCAACTTCACGCAAGGC 6349
Query 58936 CACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAGCGAGGCGGT 58995
|| ||||| || ||||| || || || |||||||| |||||||| ||| || ||
Sbjct 6348 AACAGCCAGACCATTCTGACGGGGATAAGATCCGAGCTTCCGCAGCATAGCCGAAGCCGT 6289
Query 58996 GACGGTGCCCTGCTTGATCGAGCTGGCCAGGCGCAGGATGTCGTCCCAGTG 59046
||||| || | || || | | || ||||| | |||||||||||
Sbjct 6288 CACGGTTCCACTCCGAATGGATGTAACGAGACGCAGCAGATCGTCCCAGTG 6238
>seq16447
Length=7791
Score = 100 bits (110), Expect = 2e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 6227 CTAACATTGGTTTTATGTCCAAGTTGAGTAACAAGGCAGACCATAAGTATTGCCATAGCC 6286
|||||||||| || ||||| ||| || || || || || || || || || ||||
Sbjct 7779 CTAACATTGGCTTCATGTCAAAGCTGTCCAATAAAGCTGATCACAAAATGTGTCACAGCC 7720
Query 6287 TGGCTAAAGAAGTGTTCGGTGGGGATATGCTTGATGTTGTCCTCCCTCGCCTTGACGGTT 6346
|||||||||| | || || || || |||||||||| | || || || ||||| ||||
Sbjct 7719 TGGCTAAAGAGATATTTGGCGGTGACATGCTTGATGCAGCTCTTCCGCGTCTTGATGGTT 7660
Query 6347 TTGAACGCTGCGGCGAGTCTTTTGA 6371
||||||| ||||| ||||| |||||
Sbjct 7659 TTGAACGGTGCGGAGAGTCCTTTGA 7635
>seq10554
Length=1538
Score = 93.3 bits (102), Expect = 3e-14
Identities = 77/90 (86%), Gaps = 3/90 (3%)
Strand=Plus/Minus
Query 38283 CTGAATCATTTCGGAGGGTTCCTGCTTCAACGGGCGGTCTGACTGCACCAT-CCCTCCAC 38341
||||||||| |||| |||||||||||||| |||| || || | ||||| || ||||||||
Sbjct 770 CTGAATCATCTCGGTGGGTTCCTGCTTCATCGGGAGG-CTAAATGCACTATCCCCTCCAC 712
Query 38342 AGGCA-AGCACGGCGTGCCCCGCCGCTAAA 38370
||||| | |||||| ||||| |||||||||
Sbjct 711 AGGCACAACACGGCATGCCCTGCCGCTAAA 682
>seq1262
Length=72559
Score = 84.2 bits (92), Expect = 1e-11
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 98316 TGGTGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACC 98375
||||||||||| | ||||||||||| | |||| ||||||||||||| |||||||||
Sbjct 63818 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACC 63877
Query 98376 -ACTGAGCTAAAGGGCCG 98392
|||||||||| ||||||
Sbjct 63878 AACTGAGCTAAGGGGCCG 63895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330773984537134
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |