Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq22196 89.7 1e-12 seq21925 89.7 1e-12 seq26883 84.2 5e-11 >seq22196 Length=2072 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1531 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1587 >seq21925 Length=2106 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1565 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1621 >seq26883 Length=1584 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| ||| || || || ||||| |||||||| || || Sbjct 685 ACCACCACGAAGACGCAACACCAAATGCAATGTAGACTCCTTTTGAATGTTGTAATCGGC 626 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 | |||||||||||||| | ||| || || || || |||||||| |||||||| Sbjct 625 CAATGTGCGGCCATCCTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGGTC 572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046322791118046