Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq4354 123 3e-23 >seq4354 Length=2790 Score = 123 bits (136), Expect = 3e-23 Identities = 226/329 (69%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 155730 CGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAA 155789 ||| ||| || || ||||| || || || ||||| || |||||||| || || ||| || Sbjct 1009 CGATTCATGGCTGTGGATTGGGCAGCACGCACCAAACCCTCCAATTCTGCACCACTGAAA 1068 Query 155790 TTTTTAGTTTCAA--CGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAG 155847 || || || ||| | || || | || ||||||| || | || ||| |||||| | Sbjct 1069 TTCTTTGT--CAATTCTGCAATCTCCTTGCAGTCTACATCTGGTGCCAATTTGTTGTAAT 1126 Query 155848 ATTTCATTTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATC 155907 ||| ||| || | || | |||||| | || |||| ||||| ||| || | Sbjct 1127 CACGCATGCGCGCAGTATGTATGTTGAGAATTTGCACTCGTCCCTGTTCATTGGGCAAGC 1186 Query 155908 CAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGG 155967 |||||| || | || ||| || || ||||| | | || || |||||||| | ||| Sbjct 1187 TAATTTCCATTTGCACTTCTAAACGACCAGGACGCATCAAGGCATCGTCAATCATGTCAC 1246 Query 155968 GTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAG 156027 | | || ||||| || || | ||||| || || || ||| ||||| || ||||||| Sbjct 1247 GACGATTTGTCATGCCAATAACCAAAATATTATTCAATTGTTCGACACCATCGATTTTAG 1306 Query 156028 ACAATAATTGATTGACTACGGCGTCGTGC 156056 ||| ||||||||||| || | ||| ||| Sbjct 1307 CCAACAATTGATTGACAACAGTGTCATGC 1335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666816299776440