Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18]
1,397,492 sequences; 5,759,798,599 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq599987 123 3e-23
seq599990 105 8e-18
seq791531 104 3e-17
seq599989 82.4 9e-11
>seq599987
Length=38784
Score = 123 bits (136), Expect = 3e-23
Identities = 136/179 (76%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208
||| ||||||||||||||||| || | || || || ||||| |||||||| ||||| |
Sbjct 15435 TACCTGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAA 15494
Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268
|||||||| ||||| | ||||| ||||| |||||||| ||||| ||||||| ||| |
Sbjct 15495 GGACTCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGCCAACAAGAG 15554
Query 53269 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 53325
| || | || ||| ||| | | ||||| ||||| |||| |||||| ||||||
Sbjct 15555 AGAGTTGCGAACACC--ATGAACAGCAATTTTTTCTTTGAGAGCAGCCCAATCCCAAAG 15611
Score = 113 bits (124), Expect = 5e-20
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 52876 CCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 52935
|||| | ||||||||||| |||||| || |||| | || || || ||||| || ||
Sbjct 2112 CCATGCATAAAAATGCATTGATGTTAGCTTTCCATAATTTGGCTCAGCAATATGTATGTT 2171
Query 52936 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 52995
| ||| ||||| ||||| ||||| ||||| || || || |||||||| || || || ||
Sbjct 2172 GAGAGACTGACTCTGATCAATGAAAGCTCCTCTATCAGCTGCCATTTTGATAATTGTTTT 2231
Query 52996 TTGTGGAATTTCCCAAATAGTTTTATA 53022
|| ||||||||||| | |||||||||
Sbjct 2232 CTGAGGAATTTCCCACACAGTTTTATA 2258
Score = 111 bits (122), Expect = 2e-19
Identities = 142/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 53383 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 53442
|||| |||| || ||||| || || ||| ||||||||||| || || ||||| ||
Sbjct 16297 TCCTTCATAAGTCTCGTAAGGACCCAAAGCCTCTGCTAGTTCACAGCTTGCTTCTAAAGC 16356
Query 53443 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 53502
|| || || || ||||| || |||| |||||| | |||||| || || |||||
Sbjct 16357 TCCATAGTAGATTGTTTCAAATATCTGGATATTTAACTTTTGTGCCTCTTCACTCTCAAA 16416
Query 53503 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 53562
|||||| | | ||||||||||| || || | ||||||||||| ||||| ||||| |
Sbjct 16417 TGGATACCTCATAAGAATAAACGCATCGGCAAGGCCTTGAACACCGATACCAATAGGACG 16476
Query 53563 ATGTCTCTTATTAGAG 53578
||| | | | || |||
Sbjct 16477 ATGCCGCATGTTTGAG 16492
Score = 109 bits (120), Expect = 6e-19
Identities = 163/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238
|| ||||| |||||||| | ||||| | || || ||||| || | |||||| ||||
Sbjct 36365 TTATTTCCACCCTGATCCACATATCTGGAAGTATTGTTATATACACGCAACATAGGAACC 36424
Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298
| ||||||||||| ||||||||| || | || || |||||| ||||| ||| |
Sbjct 36425 AGACCATTGGATGTACCATTGGTGCCAGCAATGTAACTTCCAGCAGCACGGATA----CA 36480
Query 54299 ATTGA----TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354
|| || || || || || ||||| ||| ||||| | || ||| | || || ||
Sbjct 36481 ATGGACGCTAAGGCCAATACCACCTGCAGATTTGGAGATCATGGCACATTGCTTCAAAGT 36540
Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405
|||||| || || || ||||| || ||| ||||| | || ||||||||
Sbjct 36541 ATCATAAATACCTTCAATACTGTCCTCCTTCATGCACAACAGGAAACAGCT 36591
>seq599990
Length=15331
Score = 105 bits (116), Expect = 8e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837
|||||| |||||||||||||| ||||| || || ||||| || ||||| | ||||||||
Sbjct 7562 TTTTTTAGTTTCTTTGTGTAGGTTTGAAACTGCAATTCTTGCCGCTAGTACAGCATAATC 7621
Query 54838 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897
||||||| || || || ||||| |||| |||| || | |||| ||||| ||
Sbjct 7622 AGGATGTTTGGTTGTCATTGTTGCTGCAGTTTCAGCTGCAAGGTTATCCAGCTCTACGGT 7681
Query 54898 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935
|||||| ||| ||||| || |||||| |||| ||
Sbjct 7682 TGTTACACCAGAATATAAACCACTGATAACTTTCAGAG 7719
>seq791531
Length=8839
Score = 104 bits (114), Expect = 3e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
||| |||| ||||||||||| | |||||||||||| || ||||| | || || || ||
Sbjct 7007 ATCCTTAATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACATTCTCCATAGC 6948
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514
||||| || || ||||||||||| || || || | || |||||| || || | |||
Sbjct 6947 AATTTGGAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTGAACCTTTC 6888
Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574
| | ||||| || || || || ||||| || || || || || | ||||| ||
Sbjct 6887 AACCAGGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAGAACATGGGAAAT 6828
Query 24575 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 24609
|||| |||| || ||| |||| | | |||||
Sbjct 6827 GAAATGCCTTTCTTCAGGTTTTAGCTGCTGCCAAT 6793
Score = 98.7 bits (108), Expect = 1e-15
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680
|| |||| ||| |||||||| | ||||| || || || ||||| |||||||||||| |
Sbjct 6576 TTCGATAAATCTACTTCTTCAGCCGTCCAGAAAGACGCTTCTGCTTTTTTATACATAGCC 6517
Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727
|| || |||||||| |||||||| ||||| |||||||| |||| ||
Sbjct 6516 CAAATATCATGATACTGAATTGGGAAAATGACAAATCTTCTTGGGTT 6470
>seq599989
Length=4882
Score = 82.4 bits (90), Expect = 9e-11
Identities = 105/142 (74%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483
|||||| || ||| | |||||||||||| || || || || ||||||| | |||||
Sbjct 4426 AGTTCCAGCTCCAAAGAGGGTAGGAGAAGCATGAGTGAAGTATCTTTCAGATAACAGATT 4485
Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542
|| |||| ||||| | ||||| ||| || | || || || || || |||||||| |
Sbjct 4486 ATATGTCTGTATAGCAGCATCTATGTCCTCACCG-TGTATGCCAACAGCTACACGCATCA 4544
Query 54543 ACATGTGCTGAGGTCTTTCAAC 54564
|||| || ||||| | ||||||
Sbjct 4545 ACATATGTTGAGGCCGTTCAAC 4566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583350085172160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |