Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq741633 105 6e-18 seq708045 95.1 1e-14 seq1341392 87.8 2e-12 seq831174 82.4 6e-11 >seq741633 Length=11487 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | || ||| | || || |||||||| || ||| || | | Sbjct 8127 ATGCAGATATTCGTTAAGACACTAACTGGTAAAACCATCACATTGGAAGTAGAGGCATCT 8186 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| ||||| ||||| | || ||||| Sbjct 8187 GATACAATTGAGAATGTGAAGGCGAAAATTCAGGATAAGGAAGGGATCCCACCTGATCAG 8246 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||| || ||||| ||||||||||| |||||| | |||| | | ||||||||| Sbjct 8247 CAGAGACTGATTTTTGCTGGCAAACAACTCGAAGATGGGAGAACTCTATCTGATTACAAT 8306 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||||||||||||||| || ||| |||| || | || || || ||| Sbjct 8307 ATTCAGAAGGAATCTACCCTGCACCTGGTATTGAGGTTGCGTGGTGGG 8354 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || |||||||||||||| || || || || ||| | || Sbjct 9324 ATGCAGATCTTTGTGAAGACATTGACGGGCAAGACTATAACTTTGGATGTTGAAGCTTCA 9383 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||||||| ||||| ||||| | || || ||| Sbjct 9384 GATACAATTGAGAATGTTAAGGCAAAAATTCAGGATAAGGAAGGAATACCACCTGACCAA 9443 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || |||||||| ||||| |||||||||||| || || | |||||||| Sbjct 9444 CAGAGGCTAATCTTTGCAGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGATTACAAC 9503 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| ||||| ||| | || ||||| | |||| ||||| || Sbjct 9504 ATTCAGAAAGAATCCACTTTGCATCTGGTGCTGAGATTGCGAGGTGG 9550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || | || ||||| ||||| || ||| |||| | || Sbjct 8640 ATGCAGATTTTTGTAAAGACCCTCACAGGCAAGACCATCACACTGGAAGTGGAAGCTTCA 8699 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||| || || |||||||| | || ||| || Sbjct 8700 GACACAATTGAAAATGTGAAGGCAAAGATCCAGGACAAAGAAGGAATTCCACCAGACCAG 8759 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || ||||| || || || ||||||||| | ||| || | ||||||||| Sbjct 8760 CAACGTCTCATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTGTCTGATTACAAT 8819 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| ||||| || ||||||| | || |||||||| Sbjct 8820 ATTCAGAAGGAATCGACTCTCCATCTGGTGTTGAGGTTGCGAGGAGG 8866 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | ||| ||||||||| |||| |||||||| |||||||| ||||| Sbjct 11241 GATAAGGAAGGCATTCCCCCAGATCAACAGCGACTCATCTTTGCAGGCAAACAGTTGGAA 11300 Query 29115 GATT--CCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 ||| | | ||| | | || || ||||||||||| ||||| |||||||| ||||| Sbjct 11301 GATGGACGTACACTTTCG--GACTATAATATTCAGAAAGAATCCACTCTTCATTTGGTGC 11358 Query 29173 TACGATTACGAGGAGGGTA 29191 |||| || |||| || || Sbjct 11359 TACGTTTGAGAGGTGGATA 11377 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || || |||||||||||| ||| ||| | | Sbjct 10920 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAAACCATTACCTTGGAAGTGGAGGCGTCG 10979 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || |||||||| | || |||||| Sbjct 10980 GACACCATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGGATTCCTCCAGATCAG 11039 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || |||||||| ||||| || || |||||| || || | |||||||| Sbjct 11040 CAACGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACCCTGTCAGATTACAAC 11099 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||||||||| || ||||| || | || || || || Sbjct 11100 ATTCAGAAGGAATCTACTCTGCATCTGGTGCTAAGGTTGCGCGGTGG 11146 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || ||| ||||| || || ||||| || || || ||||| ||| Sbjct 7992 GATAAGGAAGGTATTCCACCAGACCAACAGAGGCTGATCTTCGCAGGGAAGCAACTCGAA 8051 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 ||| || | ||| | | |||||||| ||||||||||||||||| || || |||| Sbjct 8052 GATGGTCGTACACTGT--CTGATTACAACATTCAGAAGGAATCTACCCTCCATTTGGTAC 8109 Query 29173 TACGATTACGAGGAGG 29188 || |||| |||| || Sbjct 8110 TAAGATTGAGAGGTGG 8125 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||| || |||||||| ||||| || || ||| | ||| Sbjct 8505 GATAAGGAAGGGATCCCACCTGATCAGCAGAGACTTATATTTGCAGGAAAGCAATTAGAA 8564 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| || | || || || ||||| |||||||||||||||||| | ||| | Sbjct 8565 GATGGCCGTACTTTGTCAGACTATAACATTCAAAAGGAATCTACTCTTCACCTTGTGCTC 8624 Query 29175 CGATTACGAGGAGGG 29189 || | |||||||| Sbjct 8625 AGACTTAGAGGAGGG 8639 >seq708045 Length=25632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| ||||| | || || |||||||| || || || ||| || ||| | Sbjct 10388 AAAATGCAGATATTTGTGAAGACTTTGACGGGGAAGACTATCACCTTAGAGGTAGAAGCT 10447 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || |||| ||||| ||||||||||| | ||| ||| Sbjct 10448 TCGGATACAATTGAAAATGTTAAAGCCAAAATCCAGGATAAAGAAGGAATTCCCCCGGAT 10507 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || ||||| || ||||| ||||| || |||||||| | ||| || | ||||| Sbjct 10508 CAGCAGAGACTGATATTTGCTGGCAAGCAGTTGGAAGATGGCCGAACATTGTCTGATTAT 10567 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||| ||||||||| | ||| | |||||| || | || || || Sbjct 10568 AATATCCAGAAAGAATCTACTTTACACCTTGTGTTAAGACTCCGTGGTGG 10617 >seq1341392 Length=603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| | || || | || ||||| ||||| || ||| ||| || || Sbjct 281 ATGCAGATATTTGTAAAGACCCTCACAGGCAAGACCATAACATTGGAAGTTGAAGCCTCA 340 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| ||||| ||||| | || ||||||| Sbjct 341 GACACTATAGAAAATGTCAAGGCGAAGATTCAGGATAAGGAAGGCATTCCACCAGATCAA 400 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || || ||||| || || || ||||| |||||| || | ||| | | ||||||| Sbjct 401 CAGAGGCTGATCTTCGCAGGGAAGCAACTCGAAGATGGTCGTACACTGT--CTGATTACA 458 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | ||||||||||||||||| || || |||| || |||| |||| || Sbjct 459 ACATTCAGAAGGAATCTACCCTCCATTTGGTACTAAGATTGAGAGGTGG 507 >seq831174 Length=18794 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| ||||| | || | |||||||| || || || ||| || ||| | Sbjct 4108 AAAATGCAGATATTTGTGAAGAATTTGACGGGGAAGACTATCACCTTAGAGGTAGAAGCT 4167 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || |||| ||||| ||||||||||| | ||| ||| Sbjct 4168 TCGGATACAATTGAAAATGTTAATGCCAAAATCCAGGATAAAGAAGGAATTCCCACGGAT 4227 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || ||||| || ||||| ||||| || |||||||| | ||| || | ||||| Sbjct 4228 CAGCAGAGACTGATATTTGCTGGCAAGCAGTTGGAAGATGGCCGAACATTGTCTGATTAT 4287 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||| ||||| |||||||| | ||| | ||||| Sbjct 4288 AATATCCAGAAATAATCTACTTTACACCTTGTGTT 4322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421040609625260