Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq741633 122 6e-23 seq708045 91.5 9e-14 seq302911 86.0 4e-12 seq831174 82.4 5e-11 >seq741633 Length=11487 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||||||||||||||| || |||||| ||| ||||| |||||||| || ||| Sbjct 9778 CCACCACGCAGCCTCAGCACCAGATGCAAAGTAGATTCCTTCTGAATGTTGTAATCCGAC 9719 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||| || || || ||||| ||||||||||| || Sbjct 9718 AGGGTTCGTCCATCTTCCAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 9659 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||| ||| | || | || | || | | ||| || Sbjct 9658 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTTCAATAGTGTCTGAAGCTTCTACC 9599 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || ||||| || || || |||||||| |||||||| Sbjct 9598 TCCAGGGTAATTGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 9552 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||||||||||||||| || ||||| ||| ||||| |||||||| || ||| Sbjct 10918 CCACCACGCAGCCTCAGCACCAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCTGAC 10859 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| ||||| || |||||||| || Sbjct 10858 AGGGTTCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCTGGTGGA 10799 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | || ||||| ||||||| ||| | || | || | || | | || || Sbjct 10798 ATACCTTCTTTGTCTTGTATCTTTGCCTTCACATTCTCAATGGTGTCTGAAGCCTCCACT 10739 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || ||||| || || || |||||||| |||||||| Sbjct 10738 TCCAATGTAATTGTCTTGCCTGTAAGTGTCTTCACAAAAATCTGCAT 10692 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| ||||||||||| || ||||| ||||||||| |||||||| || ||| Sbjct 9550 CCACCTCGCAATCTCAGCACCAGATGCAAAGTGGATTCTTTCTGAATGTTGTAATCAGAC 9491 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||||| || || |||| ||| ||||| || Sbjct 9490 AGGGTACGTCCATCTTCCAGTTGCTTGCCTGCAAAGATTAGCCTCTGTTGGTCAGGTGGT 9431 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || || ||| ||| | || | || | ||| | | ||| || Sbjct 9430 ATTCCTTCCTTATCCTGAATTTTTGCCTTAACATTCTCAATTGTATCTGAAGCTTCAACA 9371 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || ||||| || | || ||||||||||||||||| Sbjct 9370 TCCAAAGTTATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 9324 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||| ||| |||||||| || | |||| ||| ||||| |||||||| || ||| Sbjct 11146 CCACCGCGCAACCTTAGCACCAGATGCAGAGTAGATTCCTTCTGAATGTTGTAATCTGAC 11087 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||||||| || || ||||| || ||||| || || Sbjct 11086 AGGGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGATCTGGAGGA 11027 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | || ||||| ||||| ||| | || | || | || | || || || Sbjct 11026 ATCCCTTCTTTGTCCTGGATCTTCGCCTTCACATTCTCAATGGTGTCCGACGCCTCCACT 10967 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||||| || || || || ||||| ||||||||||| Sbjct 10966 TCCAAGGTAATGGTTTTTCCAGTAAGGGTCTTCACGAAGATCTGCAT 10920 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||||||||||| |||| ||| ||||||||| || |||||||| || || ||| Sbjct 9313 AGCCTCAGCACCAAATGTAGTGTAGATTCTTTCTGGATATTGTAGTCTGAAAGAGTGCGG 9254 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || || | || ||||| || ||||| | | ||||||||| || | || ||| Sbjct 9253 CCATCCTCAAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGTGGGATGCCTTCC 9194 Query 34292 TTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGT 34350 || || || |||||| |||| || | || | || | | ||| || || | || Sbjct 9193 TTATCTTGAAT-TTTTGCTTTTACATTCTCAATAGTGTCAGATGCTTCAACCTCTAATGT 9135 Query 34351 GATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || |||||||| ||||| |||||||| Sbjct 9134 TATGGTTTTCCCTGTAAGAGTTTTTACAAAAATCTGCAT 9096 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | |||||| || |||||||| | ||| |||||||| |||||||| || ||| Sbjct 9094 CCTCCCCTCAGCCTAAGAACCAGGTGAAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 9035 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | ||| || ||||| ||||| | | ||| ||||| || Sbjct 9034 AAAGTGCGGCCATCTTCAAGCTGTTTTCCTGCAAAAATCAATCTCTGTTGGTCTGGTGGT 8975 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| |||||| ||| | | |||| | || | | || || Sbjct 8974 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCTATGGTGTCTGATGCCTCCACT 8915 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || |||||||| || ||||| || |||||||||||||| Sbjct 8914 TCGAGTGTTATAGTTTTGCCAGTCAGAGTCTTTACAAAGATCTGCAT 8868 >seq708045 Length=25632 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || || | ||| |||||||||||| ||||||||| || || || || || Sbjct 10618 TCCACCACGGAGTCTTAACACAAGGTGTAAAGTAGATTCTTTCTGGATATTATAATCAGA 10559 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || |||||||||||||| || || || || | |||||| || ||| Sbjct 10558 CAATGTTCGGCCATCTTCCAACTGCTTGCCAGCAAATATCAGTCTCTGCTGATCCGGGGG 10499 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || || || || ||| ||||| | || | || | ||| | | ||| | Sbjct 10498 AATTCCTTCTTTATCCTGGAT-TTTGGCTTTAACATTTTCAATTGTATCCGAAGCTTCTA 10440 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||| || || || || | ||| |||||||| |||||||| Sbjct 10439 CCTCTAAGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAATATCTGCAT 10391 >seq302911 Length=9965 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 |||||||||| ||||| || ||||| || | || |||||||| || ||||| |||| Sbjct 824 CTTTCTGTATATTGTAATCTGACAGAGTCCGTCCATCTTCCAACTGTTTCCCTGCAAAAA 883 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCG 34318 | |||| ||||||||| || | || || || || |||||| ||||| | || Sbjct 884 TTAGCCTCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGAATCTTT-GCTTTGACATTT 942 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 |||| | || | || || || || | || || |||||||| || | ||||||||| Sbjct 943 TCTATTGTGTCTGACGGCTCAACTTCTAATGTTATTGTTTTGCCAGTCAACGTTTTCACA 1002 Query 34379 AAGATCTGCAT 34389 || || ||||| Sbjct 1003 AATATTTGCAT 1013 >seq831174 Length=18794 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || |||| ||| |||||||||||| || |||||| || || || || || Sbjct 4338 TCCACCACGGAGTCTCAACACAAGGTGTAAAGTAGATTATTTCTGGATATTATAATCAGA 4279 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || |||||||||||||| || || || || | |||||| || ||| Sbjct 4278 CAATGTTCGGCCATCTTCCAACTGCTTGCCAGCAAATATCAGTCTCTGCTGATCCGTGGG 4219 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || || || || ||| || || | || | || | ||| | | ||| | Sbjct 4218 AATTCCTTCTTTATCCTGGAT-TTTGGCATTAACATTTTCAATTGTATCCGAAGCTTCTA 4160 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||| || || || || | | | |||||||| |||||||| Sbjct 4159 CCTCTAAGGTGATAGTCTTCCCCGTCAAATTCTTCACAAATATCTGCAT 4111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317569459099520