Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq791531 111 1e-19 seq780057 89.7 5e-13 >seq791531 Length=8839 Score = 111 bits (122), Expect = 1e-19 Identities = 124/163 (76%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| || ||||| || || | ||||||||| || ||||| | ||||||||| || || || Sbjct 7001 AATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACATTCTCCATAGCAATTTG 6942 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTA 16622 || ||||| || ||||| ||||| | || ||| ||||| || | || |||||| | | Sbjct 6941 GAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTGAA-CCTTTCAACCA 6883 Query 16623 AGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 |||||||||||| || ||||| ||||| || || || || || Sbjct 6882 GGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAG 6840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 |||||||||||||||||||| |||| || |||| ||| || ||||| ||||| || Sbjct 7311 AAATGTAAGACCTGGCATTAAACCTCTCTTCTTAAGCCAGAAAATAGCTGCAAAACTGCC 7252 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAA 16379 ||| |||||||| ||||| || || |||||||||| Sbjct 7251 AGAGAAGAATATGCCTTCCACAGCAGCAAATGCAA 7217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/138 (75%), Gaps = 5/138 (4%) Strand=Plus/Minus Query 16046 CATCCCAATTCCAACAATAA-TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC 16104 || ||||| |||| ||| || |||||| || |||||||| ||||| | ||||| | ||| Sbjct 7623 CAGCCCAACTCCA-CAAGAAGTCTATCAGCAACAAATTCAATATATTTCTTCATAAGATC 7565 Query 16105 ACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATT 16164 ||||||||| ||||| | | ||||| | ||| ||||| || || | || ||| || || Sbjct 7564 ACAGTTCATGCCTATCATTGCCACAGGCAATGCCTCTGTCAAGAATTCTTGTTCAATCTT 7505 Query 16165 AACCGCTTC---AATGAT 16179 ||| || || |||||| Sbjct 7504 AACAGCATCCCTAATGAT 7487 >seq780057 Length=4953 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTG-ACATT 15943 || ||||||| ||| || | ||| ||||| |||| ||| |||| |||||| ||| | Sbjct 1903 TTCAAAAATCGGCATCAAGTGTAAATACATTTTCTTCTTTGTTTGCCATAACACCACACT 1844 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 | | | || || | || |||| |||||||||||||| ||||| || || ||||| | | Sbjct 1843 TCTGG-TACTCTCCTACCTTCTTCTCAAAGAAATTTGTCTTTCCCTCCAAGGAAATGTGT 1785 Query 16004 TCCATAAAATCAAAAGGATTTTTTGA 16029 ||||| || ||||| || |||| ||| Sbjct 1784 TCCATGAAGTCAAATGGGTTTTCTGA 1759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454432539751200