Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq791531 105 6e-18 >seq791531 Length=8839 Score = 105 bits (116), Expect = 6e-18 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 ||||||||||||||| || | |||||||| ||||| || | || |||||||| || || Sbjct 7001 AATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACATTCTCCATAGCAATTTG 6942 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT-GAGTAAAATCTTTCGGCCA 14591 || ||||| |||||||| ||||| | ||| || ||| || | || ||||| ||| Sbjct 6941 GAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTGAAC-CTTTCAACCA 6883 Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14631 ||||| ||||| || ||||||||||| || || || || Sbjct 6882 GGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGC 6843 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||| || |||||| | |||||||| || |||| || | Sbjct 7339 CCTCATCTCTTGAAATAAGTTCATTGCTAAATGTAAGACCTGGCATTAAACCTCTCTTCT 7280 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| || || || || || || || |||||||| || || || |||||||| | Sbjct 7279 TAAGCCAGAAAATAGCTGCAAAACTGCCAGAGAAGAATATGCCTTCCACAGCAGCAAATG 7220 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | |||| || ||| |||| | || || | | ||||| | ||||| |||| Sbjct 7219 CAATTACACGCTCTGCAAATGTGGCAGATTCATCAGCAATCCACCTGAGTGCCCAGTCAG 7160 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 ||||| || | | | || |||||||||||||| || Sbjct 7159 CCTTTTTCTTTACACATGGCAAAGTTTCAATAGCATTGAA 7120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473919673534560