Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq599987 114 2e-20 seq791531 98.7 1e-15 seq599989 91.5 2e-13 >seq599987 Length=38784 Score = 114 bits (126), Expect = 2e-20 Identities = 134/179 (75%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| || |||||||||||||| || | || || || ||||| |||||||| ||||| | Sbjct 15435 TACCTGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAA 15494 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 |||||||| ||||| | ||||| ||||| |||||||| ||||| ||||||| ||| | Sbjct 15495 GGACTCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGCCAACAAGAG 15554 Query 62507 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAG 62563 | || | || ||| ||| | | ||||| ||||| ||| |||||| |||||| Sbjct 15555 AGAGTTGCGAACACC--ATGAACAGCAATTTTTTCTTTGAGAGCAGCCCAATCCCAAAG 15611 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710 ||| ||||||| ||| || || ||||| || || || || || |||||||| |||| | Sbjct 16327 CTCTGCTAGTTCACAGCTTGCTTCTAAAGCTCCATAGTAGATTGTTTCAAATATCTGGAT 16386 Query 62711 ATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC 62770 ||||| | |||||| || || ||||||||||| | | ||||||||||| || || Sbjct 16387 ATTTAACTTTTGTGCCTCTTCACTCTCAAATGGATACCTCATAAGAATAAACGCATCGGC 16446 Query 62771 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62816 | ||||||||||| ||||| ||||| | ||| | | | || ||| Sbjct 16447 AAGGCCTTGAACACCGATACCAATAGGACGATGCCGCATGTTTGAG 16492 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 62114 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 62173 |||| | ||||||||||| ||||| || |||| | || || || ||||| || || Sbjct 2112 CCATGCATAAAAATGCATTGATGTTAGCTTTCCATAATTTGGCTCAGCAATATGTATGTT 2171 Query 62174 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 62233 | ||| ||||| ||||| ||||| ||||| || || || |||||||| || || || || Sbjct 2172 GAGAGACTGACTCTGATCAATGAAAGCTCCTCTATCAGCTGCCATTTTGATAATTGTTTT 2231 Query 62234 TTGTGCAATTTCCCAAATAGTTTTATA 62260 || | ||||||||| | ||||||||| Sbjct 2232 CTGAGGAATTTCCCACACAGTTTTATA 2258 >seq791531 Length=8839 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| ||| |||||||| | ||||| || || || ||||| |||||||||||| | Sbjct 6576 TTCGATAAATCTACTTCTTCAGCCGTCCAGAAAGACGCTTCTGCTTTTTTATACATAGCC 6517 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || || |||||||| || ||||||||||| |||||||| |||| || Sbjct 6516 CAAATATCATGATACTGAATTGGGAAAATGACAAATCTTCTTGGGTT 6470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 ||| |||| || ||||| || | |||||||||||| || ||||| | || || || || Sbjct 7007 ATCCTTAATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACATTCTCCATAGC 6948 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || ||||||||||| || || || | || |||||| || || | ||| Sbjct 6947 AATTTGGAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTGAACCTTTC 6888 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 | | ||||| || || || |||||||| || || || || || | ||||| || Sbjct 6887 AACCAGGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAGAACATGGGAAAT 6828 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 34056 |||| |||| || ||| |||| | | ||||| Sbjct 6827 GAAATGCCTTTCTTCAGGTTTTAGCTGCTGCCAAT 6793 >seq599989 Length=4882 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 ||| | | || |||||| || ||| | |||||||||||| || || || || ||||| Sbjct 4415 TGGGGTCTAGGAGTTCCAGCTCCAAAGAGGGTAGGAGAAGCATGAGTGAAGTATCTTTCA 4474 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 63769 || | ||||| || |||| ||||| | ||||| ||| || | || || || || || Sbjct 4475 GATAACAGATTATATGTCTGTATAGCAGCATCTATGTCCTCACCG-TGTATGCCAACAGC 4533 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 |||||||| ||||| || ||||| | |||||||| ||| Sbjct 4534 TACACGCATCAACATATGTTGAGGCCGTTCAACAACTTT 4572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618815536781760