Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18]
1,397,492 sequences; 5,759,798,599 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq599987 114 2e-20
seq791531 98.7 1e-15
seq599989 91.5 2e-13
>seq599987
Length=38784
Score = 114 bits (126), Expect = 2e-20
Identities = 134/179 (75%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446
||| || |||||||||||||| || | || || || ||||| |||||||| ||||| |
Sbjct 15435 TACCTGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAA 15494
Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506
|||||||| ||||| | ||||| ||||| |||||||| ||||| ||||||| ||| |
Sbjct 15495 GGACTCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGCCAACAAGAG 15554
Query 62507 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAG 62563
| || | || ||| ||| | | ||||| ||||| ||| |||||| ||||||
Sbjct 15555 AGAGTTGCGAACACC--ATGAACAGCAATTTTTTCTTTGAGAGCAGCCCAATCCCAAAG 15611
Score = 105 bits (116), Expect = 8e-18
Identities = 123/166 (74%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710
||| ||||||| ||| || || ||||| || || || || || |||||||| |||| |
Sbjct 16327 CTCTGCTAGTTCACAGCTTGCTTCTAAAGCTCCATAGTAGATTGTTTCAAATATCTGGAT 16386
Query 62711 ATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC 62770
||||| | |||||| || || ||||||||||| | | ||||||||||| || ||
Sbjct 16387 ATTTAACTTTTGTGCCTCTTCACTCTCAAATGGATACCTCATAAGAATAAACGCATCGGC 16446
Query 62771 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62816
| ||||||||||| ||||| ||||| | ||| | | | || |||
Sbjct 16447 AAGGCCTTGAACACCGATACCAATAGGACGATGCCGCATGTTTGAG 16492
Score = 104 bits (114), Expect = 3e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 62114 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 62173
|||| | ||||||||||| ||||| || |||| | || || || ||||| || ||
Sbjct 2112 CCATGCATAAAAATGCATTGATGTTAGCTTTCCATAATTTGGCTCAGCAATATGTATGTT 2171
Query 62174 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 62233
| ||| ||||| ||||| ||||| ||||| || || || |||||||| || || || ||
Sbjct 2172 GAGAGACTGACTCTGATCAATGAAAGCTCCTCTATCAGCTGCCATTTTGATAATTGTTTT 2231
Query 62234 TTGTGCAATTTCCCAAATAGTTTTATA 62260
|| | ||||||||| | |||||||||
Sbjct 2232 CTGAGGAATTTCCCACACAGTTTTATA 2258
>seq791531
Length=8839
Score = 98.7 bits (108), Expect = 1e-15
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127
|| |||| ||| |||||||| | ||||| || || || ||||| |||||||||||| |
Sbjct 6576 TTCGATAAATCTACTTCTTCAGCCGTCCAGAAAGACGCTTCTGCTTTTTTATACATAGCC 6517
Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174
|| || |||||||| || ||||||||||| |||||||| |||| ||
Sbjct 6516 CAAATATCATGATACTGAATTGGGAAAATGACAAATCTTCTTGGGTT 6470
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
||| |||| || ||||| || | |||||||||||| || ||||| | || || || ||
Sbjct 7007 ATCCTTAATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACATTCTCCATAGC 6948
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961
|| || || || ||||||||||| || || || | || |||||| || || | |||
Sbjct 6947 AATTTGGAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTGAACCTTTC 6888
Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021
| | ||||| || || || |||||||| || || || || || | ||||| ||
Sbjct 6887 AACCAGGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAGAACATGGGAAAT 6828
Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 34056
|||| |||| || ||| |||| | | |||||
Sbjct 6827 GAAATGCCTTTCTTCAGGTTTTAGCTGCTGCCAAT 6793
>seq599989
Length=4882
Score = 91.5 bits (100), Expect = 2e-13
Identities = 117/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710
||| | | || |||||| || ||| | |||||||||||| || || || || |||||
Sbjct 4415 TGGGGTCTAGGAGTTCCAGCTCCAAAGAGGGTAGGAGAAGCATGAGTGAAGTATCTTTCA 4474
Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 63769
|| | ||||| || |||| ||||| | ||||| ||| || | || || || || ||
Sbjct 4475 GATAACAGATTATATGTCTGTATAGCAGCATCTATGTCCTCACCG-TGTATGCCAACAGC 4533
Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808
|||||||| ||||| || ||||| | |||||||| |||
Sbjct 4534 TACACGCATCAACATATGTTGAGGCCGTTCAACAACTTT 4572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618815536781760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |