Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq599987 113 4e-20 seq791531 89.7 5e-13 >seq599987 Length=38784 Score = 113 bits (124), Expect = 4e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| |||||||| || || | | ||||||||||||||| ||||||||||||| | Sbjct 15436 ACCTGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAAG 15495 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGC 37247 |||||||| || | | |||||| | || |||||||| ||||||||||| Sbjct 15496 GACTCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGC 15545 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 37377 ATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATA 37436 ||| ||||| ||||| || || | |||||||| || || | ||||| || |||| Sbjct 16303 ATAAGTCTCGTAAGGACCCAAAGCCTCTGCTAGTTCACAGCTTGCTTCTAAAGCTCCATA 16362 Query 37437 ATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATA 37496 || |||||||| || || || |||||||| ||| ||| ||||| || || |||| ||| Sbjct 16363 GTAGATTGTTTCAAATATCTGGATATTTAACTTTTGTGCCTCTTCACTCTCAAATGGATA 16422 Query 37497 GCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553 | || | |||||| |||| || | || |||||||||||||| || || | ||| Sbjct 16423 CCTCATAAGAATAAACGCATCGGCAAGGCCTTGAACACCGATACCAATAGGACGATG 16479 >seq791531 Length=8839 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 |||||||| || | | ||||||||| || ||||| | ||| |||||||| ||||| || Sbjct 6997 TATGTATCAATGAGAAGACTATACATCTCAGAATGCACATTCTCCATAGCAATTTGGAAG 6938 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||||||||||||| ||| || | || || || | || ||||| | | || Sbjct 6937 CCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTGAACCTTTCAACCAGGTTT 6878 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATG 12063 || || ||||| |||||||||| || || || ||||| | ||| Sbjct 6877 TCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAGAACATG 6834 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 12116 TTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTC 12175 || |||||||||||||||||| | ||||| ||| || ||| || ||||||||| | Sbjct 6576 TTCGATAAATCTACTTCTTCAGCCGTCCAGAAAGACGCTTCTGCTTTTTTATACATAGCC 6517 Query 12176 CAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || ||||||||||||| ||| |||||||| || || || Sbjct 6516 CAAATATCATGATACTGAATTGGGAAAATGACAAATCT 6479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460340304252480