Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18]
1,397,492 sequences; 5,759,798,599 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq599987 123 3e-23
seq599990 105 9e-18
seq791531 100 4e-16
seq599989 82.4 1e-10
>seq599987
Length=38784
Score = 123 bits (136), Expect = 3e-23
Identities = 136/179 (76%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239
||| ||||||||||||||||| || | || || || ||||| |||||||| ||||| |
Sbjct 15435 TACCTGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAA 15494
Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299
|||||||| ||||| | ||||| ||||| |||||||| ||||| ||||||| ||| |
Sbjct 15495 GGACTCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGCCAACAAGAG 15554
Query 65300 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 65356
| || | || ||| ||| | | ||||| ||||| |||| |||||| ||||||
Sbjct 15555 AGAGTTGCGAACACC--ATGAACAGCAATTTTTTCTTTGAGAGCAGCCCAATCCCAAAG 15611
Score = 113 bits (124), Expect = 6e-20
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269
|| ||||| |||||||| | ||||| | || || ||||| || | |||||| ||||
Sbjct 36365 TTATTTCCACCCTGATCCACATATCTGGAAGTATTGTTATATACACGCAACATAGGAACC 36424
Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329
| ||||||||||||||||||||| || | || || |||||| ||||| ||| |
Sbjct 36425 AGACCATTGGATGTACCATTGGTGCCAGCAATGTAACTTCCAGCAGCACGGATA----CA 36480
Query 66330 ATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 66385
|| || || || || || ||||| ||| ||||| | || ||| | || || ||
Sbjct 36481 ATGGACGCTAAGGCCAATACCACCTGCAGATTTGGAGATCATGGCACATTGCTTCAAAGT 36540
Query 66386 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436
|||||| || || || ||||| || ||| ||||| | || ||||||||
Sbjct 36541 ATCATAAATACCTTCAATACTGTCCTCCTTCATGCACAACAGGAAACAGCT 36591
Score = 111 bits (122), Expect = 2e-19
Identities = 142/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 65414 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 65473
|||| |||| || ||||| || || ||| ||||||||||| || || ||||| ||
Sbjct 16297 TCCTTCATAAGTCTCGTAAGGACCCAAAGCCTCTGCTAGTTCACAGCTTGCTTCTAAAGC 16356
Query 65474 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 65533
|| || || || ||||| || |||| |||||| | |||||| || || |||||
Sbjct 16357 TCCATAGTAGATTGTTTCAAATATCTGGATATTTAACTTTTGTGCCTCTTCACTCTCAAA 16416
Query 65534 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 65593
|||||| | | ||||||||||| || || | ||||||||||| ||||| ||||| |
Sbjct 16417 TGGATACCTCATAAGAATAAACGCATCGGCAAGGCCTTGAACACCGATACCAATAGGACG 16476
Query 65594 ATGTCTCTTATTAGAG 65609
||| | | | || |||
Sbjct 16477 ATGCCGCATGTTTGAG 16492
Score = 107 bits (118), Expect = 2e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 64907 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 64966
|||| | ||||||||||| ||||| || |||| | || || || ||||| || ||
Sbjct 2112 CCATGCATAAAAATGCATTGATGTTAGCTTTCCATAATTTGGCTCAGCAATATGTATGTT 2171
Query 64967 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 65026
| ||| ||||| ||||| ||||| ||||| || || || |||||||| || || || ||
Sbjct 2172 GAGAGACTGACTCTGATCAATGAAAGCTCCTCTATCAGCTGCCATTTTGATAATTGTTTT 2231
Query 65027 TTGTGGAATTTCCCAAATAGTTTTATA 65053
|| ||||||||||| | |||||||||
Sbjct 2232 CTGAGGAATTTCCCACACAGTTTTATA 2258
>seq599990
Length=15331
Score = 105 bits (116), Expect = 9e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 66809 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATC 66868
|||||| |||||||||||||| ||||| || || ||||| || |||| | ||||||||
Sbjct 7562 TTTTTTAGTTTCTTTGTGTAGGTTTGAAACTGCAATTCTTGCCGCTAGTACAGCATAATC 7621
Query 66869 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928
||||||| || || || ||||| |||| ||||| || | |||| ||||| ||
Sbjct 7622 AGGATGTTTGGTTGTCATTGTTGCTGCAGTTTCAGCTGCAAGGTTATCCAGCTCTACGGT 7681
Query 66929 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 66966
|||||| ||| ||||| || |||||| |||| ||
Sbjct 7682 TGTTACACCAGAATATAAACCACTGATAACTTTCAGAG 7719
>seq791531
Length=8839
Score = 100 bits (110), Expect = 4e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
||| |||| ||||||||||| | |||||||||||| || ||||| | || || || ||
Sbjct 7007 ATCCTTAATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACATTCTCCATAGC 6948
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537
||||| || || ||||||||||| || || || | || |||||| || || | |||
Sbjct 6947 AATTTGGAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTGAACCTTTC 6888
Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 36597
| | ||||| || || || || ||||| || || || || || | ||||| ||
Sbjct 6887 AACCAGGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAGAACATGGGAAAT 6828
Query 36598 AAAATATTTTTCGTTTGGTGTTAGTTTATTCCAAT 36632
|||| |||| | ||| |||| | | |||||
Sbjct 6827 GAAATGCCTTTCTTCAGGTTTTAGCTGCTGCCAAT 6793
Score = 96.9 bits (106), Expect = 4e-15
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703
|| |||| ||| |||||||| | ||||| || || || ||||| |||||||||||| |
Sbjct 6576 TTCGATAAATCTACTTCTTCAGCCGTCCAGAAAGACGCTTCTGCTTTTTTATACATAGCC 6517
Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741
|| || |||||||| |||||||| ||||| ||||||||
Sbjct 6516 CAAATATCATGATACTGAATTGGGAAAATGACAAATCT 6479
>seq599989
Length=4882
Score = 82.4 bits (90), Expect = 1e-10
Identities = 105/142 (74%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514
|||||| || ||| | |||||||||||| || || || || ||||||| | |||||
Sbjct 4426 AGTTCCAGCTCCAAAGAGGGTAGGAGAAGCATGAGTGAAGTATCTTTCAGATAACAGATT 4485
Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573
|| |||| ||||| | ||||| ||| || | || || || || || |||||||| |
Sbjct 4486 ATATGTCTGTATAGCAGCATCTATGTCCTCACCG-TGTATGCCAACAGCTACACGCATCA 4544
Query 66574 ACATGTGCTGAGGTCTTTCAAC 66595
|||| || ||||| | ||||||
Sbjct 4545 ACATATGTTGAGGCCGTTCAAC 4566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 646675409717280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |