Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq302911 104 2e-17 seq741633 100 3e-16 seq302910 98.7 1e-15 >seq302911 Length=9965 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGA 139634 ||||||| ||||| ||||| || |||| ||||| |||||||| |||||| | | Sbjct 1226 CTTTTTGTATGTTGTAATCTGACAAAGTGCGACCATCTTCCAGCTGTTTGCCAGCAAATA 1285 Query 139635 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGT 139693 ||||||| |||||||| || || || ||||||||||| ||| | |||| |||| | | | Sbjct 1286 TCAGACGCTGCTGATCAGGTGGAATACCTTCTTTGTC-TTGAATCTTTGCTTTAACATTT 1344 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | ||| || | || || || || | || | ||||| || || || || || ||| Sbjct 1345 TCAATTGTATCTGAAGGTTCAACTTCCAATGTTATTGTCTTCCCCGTTAATGTCTTCACG 1404 Query 139754 AATATTTGCAT 139764 || || ||||| Sbjct 1405 AAGATCTGCAT 1415 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | |||||| || ||| | || || | ||||| || || || ||||||||||| Sbjct 859 TCTTCCAACTGTTTCCCTGCAAAAATTAGCCTCTGCTGGTCTGGTGGAATGCCTTCTTTA 918 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | |||| ||| | | ||| | |||||| | ||||| || || | || | Sbjct 919 TC-CTGAATCTTTGCTTTGACATTTTCTATTGTGTCTGACGGCTCAACTTCTAATGTTAT 977 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||||||||| || ||||||||||| Sbjct 978 TGTTTTGCCAGTCAACGTTTTCACAAATATTTGCAT 1013 >seq741633 Length=11487 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 ||||| || || |||||||| ||||| || |||| || | ||||| ||||| || || Sbjct 11116 GTAGATTCCTTCTGAATGTTGTAATCTGACAGGGTGCGTCCA-TCTTCAAGCTGCTTGCC 11058 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||| |||||||||||||| ||||| || ||||||||||| ||| || || Sbjct 11057 AGCAAAGATGAGACGTTGCTGATCTGGAGGAATCCCTTCTTTGTCCTGGATCTTCGCCTT 10998 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | |||||| || | ||| | || || || || | || Sbjct 10997 CACATTCTCAATGGTGTCCGACGCCTCCACTTCCAAGGTAATGGTTTTTCCAGTAAGGGT 10938 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 10937 CTTCACGAAGATCTGCATA 10919 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| || | ||| || | || | || || || || ||||| || ||||| | Sbjct 8866 CCTCCTCGCAACCTCAACACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCAGAC 8807 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| ||||||||| | || ||||||||||| || || || Sbjct 8806 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATGAGACGTTGCTGGTCTGGTGGA 8747 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| ||| || | | ||| | |||||| | | ||||| Sbjct 8746 ATTCCTTCTTTGTCCTGGATCTTTGCCTTCACATTTTCAATTGTGTCTGAAGCTTCCACT 8687 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| || | || ||||| || || ||||| Sbjct 8686 TCCAGTGTGATGGTCTTGCCTGTGAGGGTCTTTACAAAAATCTGCAT 8640 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| ||||||||||| |||||||| ||||| || |||| ||||| Sbjct 9077 AACCAGGTGAAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAAGTGCGGCCATCTTC 9018 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||||| || ||| | |||| | || || || || ||||| ||||| ||||| Sbjct 9017 AAGCTGTTTTCCTGCAAAAATCAATCTCTGTTGGTCTGGTGGTATACCTTCCTTGTCCTG 8958 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| || | | || | ||||| | | |||||| || | || | || || Sbjct 8957 GATCTTTGCCTTCACGTTCTCTATGGTGTCTGATGCCTCCACTTCGAGTGTTATAGTTTT 8898 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| |||| || ||||| || || |||||| || Sbjct 8897 GCCAGTCAGAGTCTTTACAAAGATCTGCATACCT 8864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| || | || || || || |||||||| ||||| | || || ||||| Sbjct 10672 ACTAAATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGATAAGGTCCTTCCATCTTCA 10613 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || |||||| |||| ||||| || || || ||||| ||||||||||| || || Sbjct 10612 AGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCTTCTTTATC-TTG 10554 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | |||||| | | ||| || || | || | || || Sbjct 10553 AATCTTAGCTTTCACATTTTCAATTGTGTCAGATGCCTCAACTTCCAATGTAATTGTTTT 10494 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | || || || || |||||||| Sbjct 10493 GCCAGTAAGTGTCTTCACAAAAATTTGCAT 10464 >seq302910 Length=12142 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGA 139634 ||||||| ||||| ||||| | || || || || || |||||||||||| ||| Sbjct 11150 CTTTTTGTATGTTGTAATCTGAGAGAGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAGA 11209 Query 139635 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGT 139693 | | || || ||||| || ||||| ||||||||||| ||| |||||| ||||| | | Sbjct 11210 TTAATCGCTGTTGATCTGGCGGTATTCCTTCTTTGTC-TTGAATTTTTGCTTTTACATTT 11268 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | |||||| | ||||| || || | || | || || || |||| |||||||| Sbjct 11269 TCAATTGTGTCTGATGGCTCAACTTCCAATGTTATTGTTTTCCCTGTCAGAGTTTTTACA 11328 Query 139754 AATATTTGCAT 139764 || || ||||| Sbjct 11329 AAAATCTGCAT 11339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487398431606400