Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq599987 145 1e-29 seq791531 104 3e-17 >seq599987 Length=38784 Score = 145 bits (160), Expect = 1e-29 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| ||||||||||||||||| || | || || || ||||| |||||||||||||| | Sbjct 15435 TACCTGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAA 15494 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 || ||||| ||||| | ||||| ||||| ||||| |||||||| ||||||| ||| | Sbjct 15495 GGACTCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGCCAACAAGAG 15554 Query 79179 ACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 | || | || ||| |||| | | ||||| ||||| |||| ||||||||||||| Sbjct 15555 AGAGTTGCGAACACC--ATGAACAGCAATTTTTTCTTTGAGAGCAGCCCAATCCCAAAGT 15612 Query 79237 TCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 || || ||||| ||| | |||||| |||| ||| Sbjct 15613 GAAGTAGGTTTAACATCCCACATATCATACTGTAAAAT 15650 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 78786 CCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 78845 |||| | || |||||||| ||||| || |||| | || || || ||||| || || Sbjct 2112 CCATGCATAAAAATGCATTGATGTTAGCTTTCCATAATTTGGCTCAGCAATATGTATGTT 2171 Query 78846 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 78905 | ||| ||||| ||||| ||||| ||||| || || || |||||||| || || || || Sbjct 2172 GAGAGACTGACTCTGATCAATGAAAGCTCCTCTATCAGCTGCCATTTTGATAATTGTTTT 2231 Query 78906 TTGTGGAATTTCCCAAATAGTTTTATA 78932 || ||||||||||| | ||||||||| Sbjct 2232 CTGAGGAATTTCCCACACAGTTTTATA 2258 Score = 104 bits (114), Expect = 3e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 79324 TCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTA 79383 || |||| |||||| || || ||||| ||||| || || || ||||| || |||| || Sbjct 16328 TCTGCTAGTTCACAGCTTGCTTCTAAAGCTCCATAGTAGATTGTTTCAAATATCTGGATA 16387 Query 79384 TTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 || | | |||||| ||| || ||||||||||| | | ||||||||||| || || Sbjct 16388 TTTAACTTTTGTGCCTCTTCACTCTCAAATGGATACCTCATAAGAATAAACGCATCGGCA 16447 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATG 79475 | ||||||||||| ||||| ||||| | ||| Sbjct 16448 AGGCCTTGAACACCGATACCAATAGGACGATG 16479 Score = 104 bits (114), Expect = 3e-17 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || ||||| |||||||| | ||||| | || || ||||| || | |||||| |||| Sbjct 36365 TTATTTCCACCCTGATCCACATATCTGGAAGTATTGTTATATACACGCAACATAGGAACC 36424 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 | ||||||||||||||||||||| || | || || |||||| ||||| ||| | Sbjct 36425 AGACCATTGGATGTACCATTGGTGCCAGCAATGTAACTTCCAGCAGCACGGATA----CA 36480 Query 80209 ATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 || || || || || || ||||| ||| ||||| | || ||| | || || || Sbjct 36481 ATGGACGCTAAGGCCAATACCACCTGCAGATTTGGAGATCATGGCACATTGCTTCAAAGT 36540 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 |||||| || || || || || || || ||||| | || |||||||| Sbjct 36541 ATCATAAATACCTTCAATACTGTCCTCCTTCATGCACAACAGGAAACAGCT 36591 >seq791531 Length=8839 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || |||| |||||||||||| | ||||| || || || ||||| |||||||||||| | Sbjct 6576 TTCGATAAATCTACTTCTTCAGCCGTCCAGAAAGACGCTTCTGCTTTTTTATACATAGCC 6517 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || || |||||||| || ||||||||||| |||||||| |||| || Sbjct 6516 CAAATATCATGATACTGAATTGGGAAAATGACAAATCTTCTTGGGTT 6470 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 ||| |||| || ||||| || | |||||||||||| || ||||| | || || || || Sbjct 7007 ATCCTTAATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACATTCTCCATAGC 6948 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || ||||||||||| || || || | || |||||| || || | ||| Sbjct 6947 AATTTGGAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTGAACCTTTC 6888 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 | | | ||||| || || || || ||||| || || || || || | ||||| || Sbjct 6887 AACCAGGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAGAACATGGGAAAT 6828 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT 50434 ||||| |||| | ||| |||| | | ||||| Sbjct 6827 GAAATGCCTTTCTTCAGGTTTTAGCTGCTGCCAAT 6793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705721613726880