Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq741633 114 1e-20 seq708045 109 4e-19 seq302911 95.1 9e-15 seq302910 91.5 1e-13 seq238538 87.8 1e-12 >seq741633 Length=11487 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 || ||||||||| | |||| || || || | ||| || || || | ||||||| | || Sbjct 11360 TAGCACCAAATGAAGAGTGGATTCTTTCTGAATATTATAGTCCGAAAGTGTACGTCCATC 11301 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 ||||| |||||||| ||||| || | |||||||||||| | || | ||||| || || Sbjct 11300 TTCCAACTGTTTGCCTGCAAAGATGAGTCGCTGTTGATCTGGGGGAATGCCTTCCTTATC 11241 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 ||| | | || || | ||| ||||||| ||| || || || | || || || Sbjct 11240 TTGGATTTTCGCCTTCACATTCTCAATTGTGTCGGAAGCTTCCACCTCCAGAGTAATGGT 11181 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| ||||| ||||||||||| ||||| Sbjct 11180 CTTCCCGGTAAGAGTCTTCACAAAAATCTGCAT 11148 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| || | ||| ||||| | |||| ||||| || | |||||||| || Sbjct 10690 CCTCCACGCAGCCTCAGCACTAAATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGAT 10631 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || || | || ||||| ||||| || | |||||||| || | || Sbjct 10630 AAGGTCCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGG 10571 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| |||| || | ||| |||||| ||||| || Sbjct 10570 ATGCCTTCTTTATCTTGAATCTTAGCTTTCACATTTTCAATTGTGTCAGATGCCTCAACT 10511 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || || || |||||||||||||||||| Sbjct 10510 TCCAATGTAATTGTTTTGCCAGTAAGTGTCTTCACAAAAATTTGCATT 10463 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | ||| |||||||| | |||||||| || || || | | | || ||| Sbjct 10444 ACCAAATGCAGAGTAGATTCCTTTTGGATGTTGTAATCTGATAAGGTCCTTCCATCTTCC 10385 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 || ||||| || ||||| || | |||||||||||| | || | ||||| || || | Sbjct 10384 AACTGTTTTCCTGCAAAGATGAGTCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGG 10325 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| ||||||| | ||| ||||| ||| || || || | || || || || Sbjct 10324 ATCTTTGCTTTGACATTCTCAATGGTGTCAGAAGCTTCCACCTCCAGAGTAATTGTCTTG 10265 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||| ||||||||||| ||||| Sbjct 10264 CCAGTAAGAGTCTTCACAAAAATCTGCAT 10236 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| || | || | ||| | ||| ||||| || | ||| ||||| ||| Sbjct 10234 CCACCACGCAACCTCAGGACAAGATGCAGAGTAGATTCCTTCTGAATATTATAATCAGAC 10175 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || |||| || || || ||||| ||||||| ||| || || | ||| Sbjct 10174 AAGGTCCGCCCATCTTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGCGGA 10115 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | |||| || | | | || ||| || || || Sbjct 10114 ATGCCTTCTTTATCCTGGATCTTCGCTTTTACATTCTCTATGGTATCGGATGCTTCTACT 10055 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||||||||| || | ||||||||||| || ||||| Sbjct 10054 TCTAATGTAATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCAT 10008 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||| || | |||| || | || ||| || || | |||||||| || Sbjct 9095 GCCTCCCCTCAGCCTAAGAACCAGGTGAAGTGTAGACTCTTTCTGAATGTTGTAATCTGA 9036 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || || | ||||| || ||||||||||||| |||||| || | || Sbjct 9035 CAAAGTGCGGCCATCTTCAAGCTGTTTTCCTGCAAAAATCAATCTCTGTTGGTCTGGTGG 8976 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| | || || | | | ||||| ||||| || Sbjct 8975 TATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCTATGGTGTCTGATGCCTCCAC 8916 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||||||||| || || ||||| || ||||| || ||||| Sbjct 8915 TTCGAGTGTTATAGTTTTGCCAGTCAGAGTCTTTACAAAGATCTGCAT 8868 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | || || | ||||||||| | || || || || | |||||| || || Sbjct 9323 GCCTCCTCTGAGCCTCAGCACCAAATGTAGTGTAGATTCTTTCTGGATATTGTAGTCTGA 9264 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || || | ||||||||| ||||||||||||| ||| || || | || Sbjct 9263 AAGAGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGTGG 9204 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || || |||| || | ||| ||||| || || || Sbjct 9203 GATGCCTTCCTTATCTTGAATTTTTGCTTTTACATTCTCAATAGTGTCAGATGCTTCAAC 9144 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||||| ||||| || || |||||||| |||||||| ||||| Sbjct 9143 CTCTAATGTTATGGTTTTCCCTGTAAGAGTTTTTACAAAAATCTGCAT 9096 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| || | ||||| ||| | |||| ||||| || | |||||||| ||| Sbjct 10918 CCACCACGCAGCCTCAGCACCAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCTGAC 10859 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || |||| || ||||| || || || | || || || || | || Sbjct 10858 AGGGTTCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCTGGTGGA 10799 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| | || || | ||| ||||| |||||| || Sbjct 10798 ATACCTTCTTTGTCTTGTATCTTTGCCTTCACATTCTCAATGGTGTCTGAAGCCTCCACT 10739 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || ||||||||||| ||||| Sbjct 10738 TCCAATGTAATTGTCTTGCCTGTAAGTGTCTTCACAAAAATCTGCAT 10692 >seq708045 Length=25632 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||||||||| | || | ||| || || || | ||| ||||| ||| Sbjct 10617 CCACCACGGAGTCTTAACACAAGGTGTAAAGTAGATTCTTTCTGGATATTATAATCAGAC 10558 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || | || ||||| || ||||| ||||| |||| || ||| ||||| | || Sbjct 10557 AATGTTCGGCCATCTTCCAACTGCTTGCCAGCAAATATCAGTCTCTGCTGATCCGGGGGA 10498 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| |||| || | ||| ||| || ||| || || Sbjct 10497 ATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTTTCAATTGTATCCGAAGCTTCTACC 10438 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || ||||| || || || | ||| |||||||| || |||||||| Sbjct 10437 TCTAAGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAATATCTGCATTTT 10388 >seq302911 Length=9965 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 42920 CCTTT-TGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||| |||| || ||| | || ||||| ||||| || |||||| Sbjct 823 CCTTTCTGTATATTGTAATCTGACAGAGTCCGTCCATCTTCCAACTGTTTCCCTGCAAAA 882 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCT 43037 || | | ||| || || | || | |||||||| || |||| || ||||||| | Sbjct 883 ATTAGCCTCTGCTGGTCTGGTGGAATGCCTTCTTTATC-CTGAATCTTTGCTTTGACATT 941 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | |||||| | ||| || |||| ||||| ||||| || || | |||||||| Sbjct 942 TTCTATTGTGTCTGACGGCTCAACTTCTAATGTTATTGTTTTGCCAGTCAACGTTTTCAC 1001 Query 43098 AAAAATTTGCATT 43110 ||| ||||||||| Sbjct 1002 AAATATTTGCATT 1014 >seq302910 Length=12142 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | |||||||| || | || | | | || || | |||||| || ||||| || Sbjct 11152 TTTTGTATGTTGTAATCTGAGAGAGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAGATT 11211 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041 |||||||||||||| | ||| | |||||||| || || |||| || | || Sbjct 11212 AATCGCTGTTGATCTGGCGGTATTCCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCA 11271 Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 | |||||| | ||| || || | ||||| ||||| || || |||||||| |||||| Sbjct 11272 ATTGTGTCTGATGGCTCAACTTCCAATGTTATTGTTTTCCCTGTCAGAGTTTTTACAAAA 11331 Query 43102 ATTTGCAT 43109 || ||||| Sbjct 11332 ATCTGCAT 11339 >seq238538 Length=16363 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42920 CCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAA 42979 ||||||| | |||||||| || | || | | | || ||||| || ||||| ||||| | Sbjct 10521 CCTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAGA 10580 Query 42980 TCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGC 43039 |||||| ||| || || | || | |||||| || || ||| | | || || | Sbjct 10581 TCAATCTCTGCTGGTCTGGTGGAATACCTTCCTTATCTTGAATCTTCGCCTTCACATTTT 10640 Query 43040 CAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAA 43099 ||| |||||| || || || |||| || || ||||| || || || || ||||| | Sbjct 10641 CAATTGTGTCTGAGGCTTCTACCTCTAAAGTAATGGTTTTCCCCGTAAGGGTCTTCACGA 10700 Query 43100 AAATTTGCATTTT 43112 |||||||||| || Sbjct 10701 AAATTTGCATCTT 10713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 374874138238536