Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq741633 98.7 8e-16 seq708045 98.7 8e-16 seq302910 89.7 4e-13 seq31008 82.4 6e-11 >seq741633 Length=11487 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||||||| || |||| ||||| ||||| ||||| |||||||||||||| | Sbjct 8353 CCACCACGCAACCTCAATACCAGGTGCAGGGTAGATTCCTTCTGAATATTGTAATCAGAT 8294 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || || ||||| || ||| |||| |||||||||||||| || Sbjct 8293 AGAGTTCTCCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGTGGG 8234 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || ||||||| || || | | | ||||| | ||| | Sbjct 8233 ATCCCTTCCTTATCCTGAATTTTCGCCTTCACATTCTCAATTGTATCAGATGCCTCTACT 8174 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||||||||| |||| || || || || || ||||| Sbjct 8173 TCCAATGTGATGGTTTTACCAGTTAGTGTCTTAACGAATATCTGCAT 8127 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 |||||||||||||| ||||||| || | || || ||||| |||||||||||||| | | Sbjct 8866 CCTCCTCGCAACCTCAACACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCAGAC 8807 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || |||||||| ||||| ||| |||| || | ||||| || || Sbjct 8806 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATGAGACGTTGCTGGTCTGGTGGA 8747 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| || || || || | | | || || || ||| | Sbjct 8746 ATTCCTTCTTTGTCCTGGATCTTTGCCTTCACATTTTCAATTGTGTCTGAAGCTTCCACT 8687 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || ||||| | || || |||||||| ||||| Sbjct 8686 TCCAGTGTGATGGTCTTGCCTGTGAGGGTCTTTACAAAAATCTGCAT 8640 >seq708045 Length=25632 Score = 98.7 bits (108), Expect = 8e-16 Identities = 169/244 (69%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||| || || | |||||||| | ||| || ||||| || || || ||||| ||||| | Sbjct 10618 TCCACCACGGAGTCTTAACACAAGGTGTAAAGTAGATTCTTTCTGGATATTATAATCAGA 10559 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 || |||| | | || |||| ||| || || ||| | || ||||||||||||||| ||| Sbjct 10558 CAATGTTCGGCCATCTTCCAACTGCTTGCCAGCAAATATCAGTCTCTGCTGATCCGGGGG 10499 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || ||||| || ||||| ||| || | | | ||||| || || Sbjct 10498 AATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTTTCAATTGTATCCGAAGCTTCTAC 10439 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTCTT 19053 || | ||| || || || || || ||||| || ||||| || |||||||| || |||| Sbjct 10438 CTCTAAGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAATATCTGCATTTT-GATTTCTT 10380 Query 19054 ATAA 19057 |||| Sbjct 10379 ATAA 10376 >seq302910 Length=12142 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||||| |||| || || || ||||| || ||||||||||| || | Sbjct 3966 CCACCACGAAGCCTTAGAACCAAATGTAATGTGGACTCTTTCTGAATATTGTAGTCAGAT 4025 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | || |||| ||||| || ||| ||||||| |||||||| || || Sbjct 4026 AAAGTACGCCCATCTTCCAATTGTTTTCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGA 4085 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| ||||| || || | | | |||||| || || | Sbjct 4086 ATTCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTATCTGATGGTTCAACT 4145 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || |||||||||||||| || ||||||||||||||||| Sbjct 4146 TCCAGTGTTATTGTTTTACCTGTTAATGTCTTGACAAAAATTTGCAT 4192 >seq31008 Length=30129 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||| || || | |||||||| | |||||| ||||| || || || ||||| ||||| | Sbjct 5483 TCCACCACGGAGTCTTAACACAAGGTGCAAAGTAGATTCTTTCTGGATATTATAATCAGA 5542 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 || |||| | | || |||| ||| || || ||| | || ||||||||||||||| Sbjct 5543 CAATGTTCGGCCATCTTCCAACTGCTTGCCAGCAAATATCAGTCTCTGCTGATCC 5597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407511823535848