Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq741633 107 1e-18 seq302910 105 4e-18 seq238538 87.8 1e-12 >seq741633 Length=11487 Score = 107 bits (118), Expect = 1e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| |||| |||||||| ||| | ||||| || || || |||||||||||||| Sbjct 8867 ACCTCCTCGCAACCTCAACACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCAGA 8808 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | || | || |||| ||||| ||| ||| || | |||||||||||| | || Sbjct 8807 CAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATGAGACGTTGCTGGTCTGGTGG 8748 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || | | | ||| || || ||| ||| ||||| | || Sbjct 8747 AATTCCTTCTTTGTCCTGGATCTTTGCC---TTCACATTTTCAATTGTGTCTGAAGCTTC 8691 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || || || || ||||| ||||| ||||| Sbjct 8690 CACTTCCAGTGTGATGGTCTTGCCTGTGAGGGTCTTTACAAAAATCTGCAT 8640 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || || ||||||||| | ||| || ||||| || |||||||| || || Sbjct 9322 CCTCCTCTGAGCCTCAGCACCAAATGTAGTGTAGATTCTTTCTGGATATTGTAGTCTGAA 9263 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || | || || | ||| || ||| ||| || || | |||||||| | || Sbjct 9262 AGAGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGTGGG 9203 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 |||||||| || || ||| |||||| | | ||| ||||| | || ||| Sbjct 9202 ATGCCTTCCTTATCTTGAATTTTTGCTTTTACATTCTCAATAGTGTCAGATGCTTCAACC 9143 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || | ||||| ||||| || |||||||||||||| ||||| |||||| Sbjct 9142 TCTAATGTTATGGTTTTCCCTGTAAGAGTTTTTACAAAAATCTGCATG 9095 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||| |||| | ||||| |||||| || |||||||| || |||||||| ||||| Sbjct 10006 CCACCTCGCAACCTTAGCACCAGATGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAT 9947 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || || || | ||||| ||| ||| || | |||||||||||| | || Sbjct 9946 AGGGTCCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCTGGAGGA 9887 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || ||| | ||| || ||| || ||||| | || || Sbjct 9886 ATACCTTCTTTATCCTGGATCTTCGCTTTCACATTTTCGATGGTGTCTGAAGCTTCCACT 9827 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || |||||||| ||||| || || || || || ||||| Sbjct 9826 TCCAGGGTAATGGTTTTTCCAGTAAGTGTCTTCACAAAGATCTGCAT 9780 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213 || || ||| |||||||| || || || || || || ||||||||||| || | | Sbjct 10679 CCTCAGCACTAAATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGATAAGGTCCTTCC 10620 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 || || | ||||| ||| ||| || | ||| || ||||| | || ||||||||||| Sbjct 10619 ATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCTTCTTT 10560 Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || |||| ||| || ||| ||| ||||| | | ||| |||| || || Sbjct 10559 ATCTTGAATCTTAGCTTTCACATTTTCAATTGTGTCAGATGCCTCAACTTCCAATGTAAT 10500 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || ||||| || || || ||||||||||| Sbjct 10499 TGTTTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 10464 >seq302910 Length=12142 Score = 105 bits (116), Expect = 4e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| ||||| |||||||| || |||||||| ||||| ||| | | || ||| Sbjct 3984 ACCAAATGTAATGTGGACTCTTTCTGAATATTGTAGTCAGATAAAGTACGCCCATCTTCC 4043 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 ||||| |||||| ||| || | | |||||||| | || || |||||||| || | Sbjct 4044 AATTGTTTTCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGG 4103 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | |||| | || ||| ||| || || |||| ||| ||||| ||||| ||| Sbjct 4104 ATTTTGGCCT---TCACATTTTCAATAGTATCTGATGGTTCAACTTCCAGTGTTATTGTT 4160 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || | || || || |||||||||||| Sbjct 4161 TTACCTGTTAATGTCTTGACAAAAATTTGCATG 4193 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC-ATCC---AATTGCTTTCCACTA 33235 |||||||||| |||||||| || | ||||| || |||| | ||| || ||| | Sbjct 11150 CTTTTTGTATGTTGTAATCTGAGA----GAGTTCTTCCATCCTCAAGTTGTTTACCAGCA 11205 Query 33236 AATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACT 33295 || ||||| || || || || | ||||| |||||||| || ||| |||||| Sbjct 11206 AAGATTAATCGCTGTTGATCTGGCGGTATTCCTTCTTTGTCTTGAATTTTTGCTTTTACA 11265 Query 33296 GTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTT 33355 ||| ||| ||||| || | ||| |||| ||||| ||||| || || ||||||||| Sbjct 11266 TTTTCAATTGTGTCTGATGGCTCAACTTCCAATGTTATTGTTTTCCCTGTCAGAGTTTTT 11325 Query 33356 ACGAAAATTTGCATG 33370 || ||||| |||||| Sbjct 11326 ACAAAAATCTGCATG 11340 >seq238538 Length=16363 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 33182 TTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATT 33241 ||||| || ||||||||||| | | | | || ||||| ||||| ||| ||| || Sbjct 10523 TTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAGATC 10582 Query 33242 AAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGA 33301 || | |||||||| | || || ||||| || || |||| | || || ||| | Sbjct 10583 AATCTCTGCTGGTCTGGTGGAATACCTTCCTTATCTTGAATCTTCGCCTTCACATTTTCA 10642 Query 33302 ATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAA 33361 || ||||| || || || || | ||| || ||||| |||||||| || || |||||| Sbjct 10643 ATTGTGTCTGAGGCTTCTACCTCTAAAGTAATGGTTTTCCCCGTAAGGGTCTTCACGAAA 10702 Query 33362 ATTTGCATGTT 33372 |||||||| || Sbjct 10703 ATTTGCATCTT 10713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313348201035816