Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq302910 138 8e-28 seq741633 107 1e-18 seq302911 104 2e-17 seq708045 95.1 8e-15 seq1341392 91.5 1e-13 seq303400 82.4 5e-11 >seq302910 Length=12142 Score = 138 bits (152), Expect = 8e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 |||| |||||||||| ||| |||||| |||||||| || || ||| |||| || Sbjct 3978 CTTAGAACCAAATGTAATGTGGACTCTTTCTGAATATTGTAGTCAGATAAAGTACGCCCA 4037 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || |||||||||||||| ||||| || | || |||||||| | || | |||||||| Sbjct 4038 TCTTCCAATTGTTTTCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGAATTCCTTCTTTG 4097 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| ||||| || || | ||| |||||||| || || || || | || ||| Sbjct 4098 TCTTGGATTTTGGCCTTCACATTTTCAATAGTATCTGATGGTTCAACTTCCAGTGTTATT 4157 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||||||| ||||| ||||| ||||| ||||||||| Sbjct 4158 GTTTTACCTGTTAATGTCTTGACAAAAATTTGCATG 4193 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 ||||||| ||||| ||||| | ||| |||| || | |||||| ||||| || | Sbjct 4320 CTTTTTGGATATTGTAATCTGAGAGGGTACGACCATCTTCTAGTTGTTTCCCTGCGAAGA 4379 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 | | || || || || | || | ||||||||||| |||||| || || | Sbjct 4380 TGAGCCTCTGTTGATCAGGTGGGATCCCTTCTTTATCCTGGATTTTTGCCTTAACATTTT 4439 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 | | ||||||| || ||||| || | || ||||||||||| || | ||| ||||||| Sbjct 4440 CTATGGTATCTGATGGTTCCACTTCCAGAGTTATTGTTTTACCAGTGAGAGTTTTCACAA 4499 Query 44112 ATATTTGCAT 44121 | |||||||| Sbjct 4500 AAATTTGCAT 4509 >seq741633 Length=11487 Score = 107 bits (118), Expect = 1e-18 Identities = 170/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 43883 TCCAATCATCAA---CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGA 43939 |||| | ||||| || |||||||| | || ||||||||| || ||| ||||| ||| Sbjct 11389 TCCATTTATCAATATCCACCTCTCAAACGTAGCACCAAATGAAGAGTGGATTCTTTCTGA 11330 Query 43940 ATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGT 43999 |||||||| || | | ||| |||| ||||| ||||| |||||||| || | || Sbjct 11329 ATATTATAGTCCGAAAGTGTACGTCCATCTTCCAACTGTTTGCCTGCAAAGATGAGTCGC 11270 Query 44000 TGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTA 44059 || || || | || | ||||| |||||| ||||| || || | ||| || Sbjct 11269 TGTTGATCTGGGGGAATGCCTTCCTTATCTTGGATTTTCGCCTTCACATTCTCAATTGTG 11210 Query 44060 TCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGC 44119 || | | ||||| || | ||||| || || ||||| | |||||||||||| || ||| Sbjct 11209 TCGGAAGCTTCCACCTCCAGAGTAATGGTCTTCCCGGTAAGAGTCTTCACAAAAATCTGC 11150 Query 44120 ATG 44122 ||| Sbjct 11149 ATG 11147 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||| |||||| | ||||| ||| | ||| ||||| ||||| || ||||| Sbjct 9551 ACCACCTCGCAATCTCAGCACCAGATGCAAAGTGGATTCTTTCTGAATGTTGTAATCAGA 9492 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| |||| ||| || |||||||| || | || || ||||| | || Sbjct 9491 CAGGGTACGTCCATCTTCCAGTTGCTTGCCTGCAAAGATTAGCCTCTGTTGGTCAGGTGG 9432 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 || ||||| ||||| ||||||| || || | ||| ||||||| | || || Sbjct 9431 TATTCCTTCCTTATCCTGAATTTTTGCCTTAACATTCTCAATTGTATCTGAAGCTTCAAC 9372 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||| | || || || || || || || ||||||||||| || |||||| Sbjct 9371 ATCCAAAGTTATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCATG 9323 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||||| |||||||| || || || || ||||| || ||||| Sbjct 8126 ACCACCTCTCAATCTTAGTACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGA 8067 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | ||| |||| || | ||| || ||||| || |||| || || ||||| | || Sbjct 8066 CAGTGTACGACCATCTTCGAGTTGCTTCCCTGCGAAGATCAGCCTCTGTTGGTCTGGTGG 8007 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| ||||| ||| || |||||| | ||| || |||| | ||| || Sbjct 8006 AATACCTTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATGGTGTCTGATGCCTCTAC 7947 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || || | |||||||| || || ||||| Sbjct 7946 TTCAAGGGTGATTGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 7899 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | || | |||||||||||| || ||||| || ||||| || || | Sbjct 9322 CCTCCTCTGAGCCTCAGCACCAAATGTAGTGTAGATTCTTTCTGGATATTGTAGTC-TGA 9264 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | || |||| || | |||||| || ||||| ||||| | |||||||| | || Sbjct 9263 AAGAGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGTGG 9204 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| ||||||| ||| || | ||| ||| || | | || || Sbjct 9203 GATGCCTTCCTTATCTTGAATTTTTGCTTTTACATTCTCAATAGTGTCAGATGCTTCAAC 9144 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| || || | ||| || ||||| || |||||| Sbjct 9143 CTCTAATGTTATGGTTTTCCCTGTAAGAGTTTTTACAAAAATCTGCATG 9095 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||| ||| |||| ||||| ||| | ||| |||||| |||||||| || || | Sbjct 10006 CCACCTCGCAACCTTAGCACCAGATGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAT 9947 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | || |||| || | || || || ||||| || | ||||||||||| |||| Sbjct 9946 AGGGTCCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCTGGAGGA 9887 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| || || ||| || | | | || |||| | ||||| Sbjct 9886 ATACCTTCTTTATCCTGGATCTTCGCTTTCACATTTTCGATGGTGTCTGAAGCTTCCACT 9827 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || | ||||||||||| || ||||| Sbjct 9826 TCCAGGGTAATGGTTTTTCCAGTAAGTGTCTTCACAAAGATCTGCAT 9780 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || || |||||||||||||| || ||| |||| |||| || ||||||||||| Sbjct 10198 TCCTTCTGAATATTATAATCAGACAAGGTCCGCCCATCTTCCAGCTGCTTTCCTGCAAAG 10139 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | |||||||| | || | ||||||||||| || || ||| || | Sbjct 10138 ATCAATCTCTGCTGGTCTGGCGGAATGCCTTCTTTATCCTGGATCTTCGCTTTTACATTC 10079 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | || || || | ||||| ||||| || || || || |||||| Sbjct 10078 TCTATGGTATCGGATGCTTCTACTTCTAATGTAATAGTTTTTCCAGTCAAGGTTTTCACA 10019 Query 44111 AATATTTGCATG 44122 ||||| |||||| Sbjct 10018 AATATCTGCATG 10007 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | || | |||||||| || || || ||||| || || ||||| | Sbjct 10462 CCACCTCTTAGCCTCAGAACCAAATGCAGAGTAGATTCCTTTTGGATGTTGTAATCTGAT 10403 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| ||||| |||||||||||||| || | || || || || |||| Sbjct 10402 AAGGTCCTTCCATCTTCCAACTGTTTTCCTGCAAAGATGAGTCGCTGTTGATCTGGAGGA 10343 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| || ||| |||||| | ||| || || | | ||||| Sbjct 10342 ATGCCTTCCTTGTCTTGGATCTTTGCTTTGACATTCTCAATGGTGTCAGAAGCTTCCACC 10283 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||||| || || || | |||||||||||| || ||||| Sbjct 10282 TCCAGAGTAATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 10236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTT 43953 ||||| |||| || | |||| || || || |||||| ||||| || ||||| | Sbjct 9094 CCTCCCCTCAGCCTAAGAACCAGGTGAAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 9035 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || |||| || | |||||||||||||| ||||| | || ||||| | || Sbjct 9034 AAAGTGCGGC-CATCTTCAAGCTGTTTTCCTGCAAAAATCAATCTCTGTTGGTCTGGTGG 8976 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 || |||||| || || || ||| || || | | | || |||| | |||||| Sbjct 8975 TATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCTATGGTGTCTGATGCCTCCAC 8916 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || ||||| || || | |||||| ||||| || ||||| Sbjct 8915 TTCGAGTGTTATAGTTTTGCCAGTCAGAGTCTTTACAAAGATCTGCAT 8868 >seq302911 Length=9965 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| ||||| |||||||| || | || |||||||| | || | ||||||| Sbjct 857 CATCTTCCAACTGTTTCCCTGCAAAAATTAGCCTCTGCTGGTCTGGTGGAATGCCTTCTT 916 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| ||| |||||| | | | || |||| |||||| || || | || | Sbjct 917 TATCCTGAATCTTTGCTTTGACATTTTCTATTGTGTCTGACGGCTCAACTTCTAATGTTA 976 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| || || || || ||||||||||||||||| Sbjct 977 TTGTTTTGCCAGTCAACGTTTTCACAAATATTTGCAT 1013 >seq708045 Length=25632 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 ||||||||| | |||| || ||||| || ||||||||||| ||| || | Sbjct 10606 TCTTAACACAAGGTGTAAAGTAGATTCTTTCTGGATATTATAATCAGACAATGTTCGGCC 10547 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| ||||| || || || |||||||||| | ||||| ||| | || | |||||||| Sbjct 10546 ATCTTCCAACTGCTTGCCAGCAAATATCAGTCTCTGCTGATCCGGGGGAATTCCTTCTTT 10487 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 ||| ||||| ||| || | ||| ||||| | | || || || | || || Sbjct 10486 ATCCTGGATTTTGGCTTTAACATTTTCAATTGTATCCGAAGCTTCTACCTCTAAGGTGAT 10427 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCTTTGTAAC 44137 || || || || ||||||||||||||||| ||||| | || | || |||| Sbjct 10426 AGTCTTCCCCGTCAAAGTCTTCACAAATATCTGCATTTTGATTTCTTATAAC 10375 >seq1341392 Length=603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| | || | || || ||| ||| ||||||||||| || || Sbjct 280 ACCACCTCTCAATCTAAGGACAAGGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGA 221 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| || |||| |||| || ||||| ||||| |||| || || ||||| | || Sbjct 220 CAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGG 161 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| ||||| ||| || |||||| | ||| || |||| | ||| || Sbjct 160 AATACCTTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATGGTGTCTGATGCCTCTAC 101 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || || | |||||||| || || ||||| Sbjct 100 TTCAAGGGTGATTGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 53 >seq303400 Length=5017 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 43933 TTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATAT 43992 ||| || ||||||||||| ||| || |||| ||||| || || || |||||||| Sbjct 5017 TTTCTGGATATTATAATCAGACAATGTTCGGCCATCTTCCAACTGCTTGCCAGCAAATAT 4958 Query 43993 CAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGC 44052 || | ||||| ||| || | ||||||||||| ||||| ||| || | | Sbjct 4957 CAGTCTCTGCTGATCCGTGGGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTTTC 4898 Query 44053 AACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAA 44112 || ||||| | | || || || | || || || || || || |||||||||||||| Sbjct 4897 AATTGTATCCGAAGCTTCTACCTCTAAGGTGATAGTCTTTCCCGTCAAAGTCTTCACAAA 4838 Query 44113 TATTTGCATGTCGAGTCTTTGTAAC 44137 ||| ||||| | || | || |||| Sbjct 4837 TATCTGCATTTTGATTTCTTATAAC 4813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348735051420816