Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq741633 96.9 3e-15 seq1341392 82.4 6e-11 >seq741633 Length=11487 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| |||||||| ||||| | ||| || || ||||| ||||| |||||||||| Sbjct 8867 ACCTCCTCGCAACCTCAACACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCAGA 8808 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || | || |||||||||||||| | |||| | ||| ||||| || | Sbjct 8807 CAGAGTGCGGC-CATCTTCCAGCTGCTTACCAGCAAAAATGAGACGTTGCTGGTCTGGTG 8749 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| |||||| || || ||| | | | || || || | || ||| Sbjct 8748 GAATTCCTTCTTTGTCCTGGATCTTTGCCTTCACATTTTCAATTGTGTCTGAAGCTTCCA 8689 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | ||| ||||| || || ||||| || || ||||||||||||||| Sbjct 8688 CTTCCAGTGTGATGGTCTTGCCTGTGAGGGTCTTTACAAAAATCTGCATC 8639 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| ||| | ||| | ||| | ||| ||||| |||||||||||||| | Sbjct 10919 ACCACCACGCAGCCTCAGCACCAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCTGA 10860 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| | || ||||||||||| || || | || | ||| ||||| || || Sbjct 10859 CAGGGTTCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCTGGTGG 10800 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||| ||||| || || ||| | | | | ||||| || | || |||| Sbjct 10799 AATACCTTCTTTGTCTTGTATCTTTGCCTTCACATTCTCAATGGTGTCTGAAGCCTCCAC 10740 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| || || || || || || || ||||||||||||||||| Sbjct 10739 TTCCAATGTAATTGTCTTGCCTGTAAGTGTCTTCACAAAAATCTGCAT 10692 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | || | |||||||| ||| || |||||||||||||| | | Sbjct 9094 CCTCCCCTCAGCCTAAGAACCAGGTGAAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 9035 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | || || ||||| || || | |||| || | ||| || || || Sbjct 9034 AAAGTGCGGCCATCTTCAAGCTGTTTTCCTGCAAAAATCAATCTCTGTTGGTCTGGTGGT 8975 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| || || ||| | | ||||||| || | | |||| Sbjct 8974 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCTATGGTGTCTGATGCCTCCACT 8915 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| |||||| ||||| || || ||||| || ||||| |||||||| Sbjct 8914 TCGAGTGTTATAGTTTTGCCAGTCAGAGTCTTTACAAAGATCTGCAT 8868 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||||||||| ||| | ||| || || ||||| |||||||||||||| | | Sbjct 11146 CCACCGCGCAACCTTAGCACCAGATGCAGAGTAGATTCCTTCTGAATGTTGTAATCTGAC 11087 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | || || |||||||| || | | || | ||| |||||||| || Sbjct 11086 AGGGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGATCTGGAGGA 11027 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||| |||||| || ||| ||| | | | | ||||| || | | |||| Sbjct 11026 ATCCCTTCTTTGTCCTGGATCTTCGCCTTCACATTCTCAATGGTGTCCGACGCCTCCACT 10967 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || |||||||| || || || || ||||| || |||||||| Sbjct 10966 TCCAAGGTAATGGTTTTTCCAGTAAGGGTCTTCACGAAGATCTGCAT 10920 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||||||| | || | ||| || || ||||| ||||| || ||||||| Sbjct 10235 ACCACCACGCAACCTCAGGACAAGATGCAGAGTAGATTCCTTCTGAATATTATAATCAGA 10176 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| ||| | || ||||||||||| || | | || || | |||||| || ||| Sbjct 10175 CAAGGTCCGCCCATCTTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGCGG 10116 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||| || ||| || ||| || | | | |||||||||||| | || Sbjct 10115 AATGCCTTCTTTATCCTGGATCTTCGCTTTTACATTCTCTATGGTATCGGATGCTTCTAC 10056 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| || ||||| || || | ||||||||||| |||||||| Sbjct 10055 TTCTAATGTAATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCAT 10008 >seq1341392 Length=603 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| |||| || ||||| || || ||||| |||||||||||||||| Sbjct 508 ACCACCTCTCAATCTTAGTACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGA 449 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | || | || || || ||||| || || | || | | ||| ||||| || Sbjct 448 CAGTGTACGACCATCTTCGAGTTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCTGGTGG 389 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| ||| ||||| | |||| || || | || || | Sbjct 388 AATGCCTTCCTTATCCTGAATCTTCGCCTTGACATTTTCTATAGTGTCTG-AGGCTTCAA 330 Query 48679 C-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || | ||||||||| || || ||||| || || ||||| |||||||| Sbjct 329 CTTCCAATGTTATGGTCTTGCCTGTGAGGGTCTTTACAAATATCTGCAT 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414076477469492