Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq451703 111 8e-20 seq776066 104 1e-17 seq481049 104 1e-17 seq848923 102 4e-17 seq1116363 100 1e-16 seq904752 100 1e-16 seq165507 100 1e-16 seq607487 98.7 5e-16 seq481121 98.7 5e-16 seq481104 98.7 5e-16 seq451690 98.7 5e-16 seq253212 98.7 5e-16 seq169109 96.9 2e-15 seq607485 93.3 2e-14 seq582877 93.3 2e-14 seq992382 91.5 8e-14 seq257231 89.7 3e-13 seq767502 86.0 3e-12 seq327626 84.2 1e-11 >seq451703 Length=6803 Score = 111 bits (122), Expect = 8e-20 Identities = 88/105 (84%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 ||||| |||| | |||||| |||||||| || |||||||||| |||||||||| Sbjct 4787 AATATCGAAT--AGAAAAAAC---ATTGGCCCGTGGGGGGATCGAACCCACGACCTTCGC 4841 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||||||||||||| ||||| |||||||||||||| |||||||||| Sbjct 4842 GTTATTAGCACGAGGCTCTAACCAACTGAGCTAACGGGCCGTCGA 4886 >seq776066 Length=1956 Score = 104 bits (114), Expect = 1e-17 Identities = 78/91 (86%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11440 TAATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||| |||||| | |||||| || | |||||||||| ||||||||||||||||||| Sbjct 1458 TAATAGAAAAATTACCGTGGCCCGTGGAGGGATCGAACCCACGACCTTCGCGTTATTAGC 1517 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||| |||||||||||||| ||||| Sbjct 1518 ACGAGGCTCTAACCAACTGAGCTAACGGGCC 1548 >seq481049 Length=9678 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 3590 AAAAAT--AATTGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACA 3647 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| ||||| Sbjct 3648 CTCTAACCAACTGAGCTAACGGGCC 3672 >seq848923 Length=14670 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||| || |||||||||| |||||||||||||||||||||||| |||| || Sbjct 10445 AAATTGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACACTCTAAC 10504 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||| ||||| Sbjct 10505 CAACTGAGCTAACGGGCC 10522 >seq1116363 Length=5213 Score = 100 bits (110), Expect = 1e-16 Identities = 77/91 (85%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11440 TAATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||| |||||| | |||||| || |||||||||| ||||||||||||||||||| Sbjct 456 TAATAGAAAAATTACCGTGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGC 397 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||| |||||||||||||| ||||| Sbjct 396 ACGAGGCTCTAACCAACTGAGCTAACGGGCC 366 >seq904752 Length=8992 Score = 100 bits (110), Expect = 1e-16 Identities = 78/92 (85%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||| || |||||||||| ||||||||||||||||||| |||| Sbjct 6254 AAAAAATAA---TGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCTCGAC 6310 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534 ||||| |||||||||||||| ||||| ||||| Sbjct 6311 GCTCTAACCAACTGAGCTAACGGGCCGGTCGA 6342 >seq165507 Length=1205 Score = 100 bits (110), Expect = 1e-16 Identities = 77/91 (85%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11440 TAATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||| |||||| | | |||||| || ||| |||||| ||||||||||||||||||| Sbjct 362 TAATAGAAAAATAACAGTGGCCCGTGGGGGGACCGAACCCACGACCTTCGCGTTATTAGC 303 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||| ||||| Sbjct 302 TCGACGCTCTAACCAACTGAGCTAACGGGCC 272 >seq607487 Length=5600 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| || |||||||||| ||||||||||||||||||||||||||| | |||| Sbjct 1782 ATTGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTGTAACCA 1841 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| ||||| Sbjct 1842 ACTGAGCTAACGGGCC 1857 >seq481121 Length=40320 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| || |||||||||| |||||||||||||||||||||| |||||| |||| Sbjct 10717 ATTGGCCCGTGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCA 10658 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| ||||| Sbjct 10657 ACTGAGCTAACGGGCC 10642 >seq481104 Length=4503 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| || |||||||||| |||||||||||||||||||||||| |||| |||| Sbjct 626 ATTGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACTCTCTAACCA 685 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| ||||| Sbjct 686 ACTGAGCTAACGGGCC 701 >seq451690 Length=8642 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| || |||||||||| |||||||||||||||||||||| |||||| |||| Sbjct 1995 ATTGGCCCGTGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCA 1936 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| ||||| Sbjct 1935 ACTGAGCTAACGGGCC 1920 >seq253212 Length=565 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| || |||||||||| ||||||||||||||||||||||||||| | |||| Sbjct 322 ATTGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTGTAACCA 381 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| ||||| Sbjct 382 ACTGAGCTAACGGGCC 397 >seq169109 Length=10834 Score = 96.9 bits (106), Expect = 2e-15 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 5477 GGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACGGG 5418 Query 11528 CC 11529 || Sbjct 5417 CC 5416 >seq607485 Length=4721 Score = 93.3 bits (102), Expect = 2e-14 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||| ||||||| |||||||| || |||||||||| |||||||||||||||||| Sbjct 1536 ATTCATAAAAAC----ATTGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAG 1591 Query 11498 CACGACGCTCTRACCAACTGAGCTAA 11523 ||||||||| | |||||||||||||| Sbjct 1592 CACGACGCTGTAACCAACTGAGCTAA 1617 >seq582877 Length=11038 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| || ||| |||||| ||||||||||| ||||||||||| ||||| |||| Sbjct 4028 ATTGGCCCGTGGGGGGAACGAACCCCCGACCTTCGCGCTATTAGCACGATGCTCTAACCA 3969 Query 11514 ACTGAGCTAATGGGCCGTCG 11533 |||||||||| |||||| || Sbjct 3968 ACTGAGCTAACGGGCCGACG 3949 >seq992382 Length=1913 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || |||||||||| |||||||||| ||||||||||| |||||| |||||| Sbjct 882 TGGCCCGTGGGGGGATCGAACCCACGACCTTCGCATTATTAGCACGCCGCTCTAACCAAC 941 Query 11516 TGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 942 TGAGCTAACGGGCC 955 >seq257231 Length=2546 Score = 89.7 bits (98), Expect = 3e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| || ||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct 758 ATTGGCCCGTGGGGGGATCAAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 817 Query 11514 ACTGAGCTAATGGGCC 11529 |||| ||||| | ||| Sbjct 818 ACTGCGCTAACGTGCC 833 >seq767502 Length=9263 Score = 86.0 bits (94), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||||||||||||||| | |||||| |||||||||||||| ||| Sbjct 1390 GGATCGAACCCGCGACCTTCGCGTTATTAGCGCTCCGCTCTAACCAACTGAGCTAACGGG 1331 Query 11528 CC-GTCGACGA 11537 || | |||||| Sbjct 1330 CCAGACGACGA 1320 >seq327626 Length=2764 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| || |||||||||| |||||||||||||||||||||||||| || ||| Sbjct 706 ATTGGCCCGTGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCGCTATCCA 765 Query 11514 ACTGAGCTAA 11523 |||||| ||| Sbjct 766 ACTGAGTTAA 775 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 257037499205392