Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq780057 91.5 2e-13 seq788763 84.2 2e-11 >seq780057 Length=4953 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 || ||||||| ||||| | || || ||||| |||||||| |||| ||||| || | Sbjct 1903 TTCAAAAATCGGCATCAAGTGTAAATACATTTTCTTCTTTGTTTGCCATAACACCACACT 1844 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 | || || || | || | || || || |||||||||||||| ||||| || || || Sbjct 1843 TCTGGTACTCTCCTACCTTCTTCTCAAAGAAATTTGTCTTTCCCTCCAAGGAAATGTGTT 1784 Query 21246 CCATAAAATCAAATGGATTTTCAGA 21270 |||| || |||||||| ||||| || Sbjct 1783 CCATGAAGTCAAATGGGTTTTCTGA 1759 >seq788763 Length=9436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 131887 GGCTGATGTATGCGAATCTCTAGAAAAAGCAATAGATAAATATAAAGATGGAATGTATTC 131946 ||| || | |||| ||||| | ||| ||||||| | |||| | ||||||||||||| Sbjct 480 GGCAGAGGCATGCAAATCTGTTGAACAAGCAATGAAAAAATGTCCCAATGGAATGTATTC 421 Query 131947 AGAGGTAAAATATGATGGGGAGCGTGTACAAATTCATAAAAAAGATAATGTATACAATTA 132006 || |||| |||||||| || || |||||| |||| |||| || | ||| | ||| || Sbjct 420 TGAAATAAAGTATGATGGTGAACGGGTACAAGTTCACAAAAGAGGTGATGATTTCAAGTA 361 Query 132007 TTTTAGTAGAAATTTAAAACCTGT 132030 ||| |||| || || ||||| Sbjct 360 TTTCTCCAGAAGCTTGAAGCCTGT 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522609211090080