Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq600855 113 1e-19 seq599987 109 1e-18 seq43441 96.9 9e-15 seq1228585 91.5 4e-13 >seq600855 Length=4662 Score = 113 bits (124), Expect = 1e-19 Identities = 236/347 (68%), Gaps = 10/347 (3%) Strand=Plus/Plus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 |||||| || || ||||| || || ||||| |||||||||||||| ||||| ||| || Sbjct 2250 AGGTGACCTTGGTCCAGTGTATGGTTTTCAGTGGCGCCACTTTGGAGCAGATTACGAAG- 2308 Query 111548 CATGCAC-GACTCA---TATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATC 111603 | || || || ||||| | || ||||||| | ||| |||| || | | Sbjct 2309 ---GAACTGATTCCAACTATGAGGGCAAAGGTGTTGATCAACTTCAGCATGTGATACA-C 2364 Query 111604 AAATTAAGAACAAC-CCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCA 111662 | | || | |||| ||| | ||| ||||| || ||| |||| ||||||||| | Sbjct 2365 ACACTACGCACAAATCCAGATGATCGCCGCATCATCATGTGTGCGTGGAACCCACGAGAT 2424 Query 111663 TTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGG 111722 |||| ||||| || || || || ||| || || ||||||||| | ||| Sbjct 2425 TTGGGCCTTATGGCTCTGCCCCCTTGCCATTGCTTGGTACAATTTTATGTAGCAAATGGG 2484 Query 111723 ATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782 ||| |||||||| | || || |||| || ||||| || ||||||||||| |||||| Sbjct 2485 GAGCTGTCATGCCAGCTATACCAAAGATCAGCAGATATGGGACTTGGTGTTCCATTTAAT 2544 Query 111783 ATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAA 111829 | || || || || ||| | || ||| | | ||| | ||||||| Sbjct 2545 GTAGCCAGCTATGCTCTATTGACATGCATGTTAGCTGCTGTTACAAA 2591 >seq599987 Length=38784 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 364123 TGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGAT 364182 |||| ||| || || || || || | || || || ||||| || ||| ||||||| ||| Sbjct 17098 TGGTATGCTATTATAGAGTCTCAAGTGGAAACTGGCACACCTTACATGCTGTACAAGGAT 17039 Query 364183 TCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGT 364242 | ||||| || |||||||| |||||| | || |||||||| | |||||||||||| Sbjct 17038 GCATGCAATCGAAAGTCCAATCAGCAGAATCTAGGTACAATAAAATCCAGCAACCTATGT 16979 Query 364243 ACCGAGATTATTGAATACAC 364262 ||||||||||| || ||||| Sbjct 16978 ACCGAGATTATCGAGTACAC 16959 >seq43441 Length=6674 Score = 96.9 bits (106), Expect = 9e-15 Identities = 85/105 (81%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 12819 ATATGTTGATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCC 12878 |||| ||||||||||||||| || ||||||||||||||||||||| |||||| |||| || Sbjct 2346 ATAT-TTGATCCAAATGTCAAAGCATCCATGTCTTCAGTTGCTGTCGCATACACTTTACC 2404 Query 12879 TGTTTTTACATATGCAGCACATGTAGCTTCGGCCTCACATGGTGC 12923 | ||| ||| || ||||| ||||| || ||||| ||||| Sbjct 2405 CGCTTTGACAAGGGCCGCACACTGCGCTTCAGCTTCACAAGGTGC 2449 >seq1228585 Length=262 Score = 91.5 bits (100), Expect = 4e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| ||||| || ||| ||| ||||||| | || || |||||||| Sbjct 16 TTCACGCACGCGACGCCGACCCTGTTCAACTCTGGAACGCCCAACCCCCAGATGTCCAGC 75 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | || |||||||| |||||||||||||| ||| || | ||| | Sbjct 76 TGCTTCATCATGCCGATTAAGGACGACAGCATCGAGGGTATCTATGAGACGTTGAAGCAG 135 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG 363701 || || || ||||||||| ||| || |||||||| Sbjct 136 TGCGCGCTGGTTTCCAAGAGTGCCGGTGGAATTGG 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1280016576438744