Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_007805.1 Length=39199 Score E Sequences producing significant alignments: (Bits) Value seq1291351 154 4e-33 seq217096 125 2e-24 seq1288863 122 2e-23 seq1263006 105 2e-18 >seq1291351 Length=394 Score = 154 bits (170), Expect = 4e-33 Identities = 272/391 (70%), Gaps = 4/391 (1%) Strand=Plus/Plus Query 797 ATTCGGGTCGTAAACTTCGTGAAGTCGGCACGCATCGGCTACACGAAAATGCTGATGGCC 856 || |||||||| || || ||| || || |||||| || || |||||| || Sbjct 6 ATCCGGGTCGTGAATATCCGCAAGAGCGCGCGGGTCGGCTTTACCAAGATGCTGCACGCT 65 Query 857 AACATCGGCTACAAGATTCAGCACAAGCGCCGTAATGTGCTGATGTGGAGCCCGACTGAC 916 |||| || |||||| | || |||||||| || || || |||| | |||| || || Sbjct 66 AACAAGGGGTACAAGCTCCACCACAAGCGGCGCAACGTCCTGAGCTACTGCCCCACCGAT 125 Query 917 CCAGACGCCGAGGGGATCA-GCAAGAGCCACGTTAATGGCCTGATTCGCGATGTTCCGGT 975 || ||||| || | | || | |||||| | ||| | | || | ||||| || ||| Sbjct 126 CCTGACGCGGAAGCCAACATGAAAGAGC-ATGTTGAGCCCATGCTCCGCGACGTCGAGGT 184 Query 976 GCTGCTGGCGCTGGCCCCATGGTATGGCCGCAAGCATAGCGACAACACGCTCGACACCAA 1035 |||| | ||||||||| ||| ||| |||||| |||||| | | || ||| | | Sbjct 185 GCTGACCGAGCTGGCCCCCTGGATCGGCAAAAAGCATCGCGACAGCTCCCT-GACCCGCA 243 Query 1036 GGTGTTTG-CAAACCGGCGGACCCTTTGGACGCTCGGCGGCAAGGCTGCTCGCAACTACC 1094 | | || | ||||| |||| |||| || ||||||||||| | |||||||||| Sbjct 244 AGCGCCTGACCAACCGCAAGACCTATTGGTGCCTGGGCGGCAAGGCGGGGCGCAACTACC 303 Query 1095 GTGAGAGATCTGCCGACGAGGTGATCTATGACGAGCTGTCGAAGTTCGACGCCGATATTG 1154 | | || |||| | || ||||| || || ||||||||||| |||||||||||| | | Sbjct 304 GCGGGAAATCTACGGATGAGGTCATTTACGACGAGCTGTCCAAGTTCGACGCCTCGGTCG 363 Query 1155 AAGGTGAAGGTTCCCCAACGTTCCTTGGCGA 1185 |||| || || || || || ||||| ||||| Sbjct 364 AAGGCGAGGGCTCGCCGACATTCCTCGGCGA 394 >seq217096 Length=301 Score = 125 bits (138), Expect = 2e-24 Identities = 180/252 (71%), Gaps = 10/252 (4%) Strand=Plus/Plus Query 5760 CGCCGAGTACAAGTACGTCACCCTCGGCGAGCGCGGCGAGCAGATCATCCTGGCCACCTA 5819 || |||||||||| | | |||| |||| || ||||||||| | ||||| || || ||||| Sbjct 58 CGGCGAGTACAAGCAGGGCACCATCGGTGACCGCGGCGAGAAAATCATTCTCGCGACCTA 117 Query 5820 CGGAGAGCTGTTCAGCATCACCCGTCAGGCGATCATCAACGACGACCTGCAGATGCTCTC 5879 ||| | || |||| |||| ||||| |||||||||||||||||| || || Sbjct 118 CGGCAAACTCTTCA------CCCGCCAGGCCATCATCAACGACGACCTG--TCCGCCTTC 169 Query 5880 GG--ATATCCCGTTCAAGCTGGGCCAGGCTGCCAAGGCCACCATCGGCGACCTGGTCTAT 5937 || || ||| | |||| | || || | |||| | || |||||||||||| Sbjct 170 GGCCGCATTCCGCGCGCCATGGGTCGCGCAGCAATTCGCACCGTTGGTGACCTGGTCTAT 229 Query 5938 GCGGTTCTGACCGGTAACCCGGCGATGAGCGATGGCAAGACTCTCTTCCATGCCGACCAC 5997 || | |||| | |||| ||| ||| ||| || ||| | || ||||| ||||||||| Sbjct 230 GCCCTGCTGAAAGCGAACCGGGCTATGTCCGACGGTAAGGCGCTGTTCCACGCCGACCAC 289 Query 5998 AGCAACCTGCTC 6009 ||||||||||| Sbjct 290 GGCAACCTGCTC 301 >seq1288863 Length=386 Score = 122 bits (134), Expect = 2e-23 Identities = 213/303 (70%), Gaps = 24/303 (8%) Strand=Plus/Plus Query 123 CGCGAGCCTCGGGATTTCTCCGCAAGCCTTTGATAAATGGGGCGTTGAGCCTG----CCG 178 ||| |||||||| || || ||||||||||||||||||||||||||| | ||| Sbjct 20 CGCAAGCCTCGGAATCAGCCCCACAGCCTTTGATAAATGGGGCGTTGAGCCGGTTATCCG 79 Query 179 CCAAGATCGGCCGCGAGGTGTTCTATACCGCCCAGGCGGTGCTACAGAATCGCCTCGATC 238 ||| | ||||||||| ||||||| ||||| | |||| || | ||||||||| | Sbjct 80 CCATG----GCCGCGAGGCGTTCTATGACGCCCGGACGGTCCTGGAAAATCGCCTCAGCC 135 Query 239 ATGTGACCCAG---AAACAACAACCTGAGGGCCTAGATGCGGAAGGTCTCGACCCGCTCG 295 | | ||||| ||| | ||||| | || || || || || ||||||| |||| Sbjct 136 ACG---CCCAGGCGAAATACCAACCCG-----CT-GACGCCGATGGCATCGACCCCCTCG 186 Query 296 CTGAAAAGAAATTGCTACAGGAGCGCCTGCGACTGACGACTGCTCAGGCTGACGCCCAGG 355 | || || || | ||||||||||| || || || || || ||||| || ||||||| Sbjct 187 CGGAGAAAAAGCTCACCCAGGAGCGCCTCCGCCTAACCACGGCCCAGGCCGATGCCCAGG 246 Query 356 AGCAGAAGAACCAGGT--CCAAGCGAAGACCCTTGTTCCAACTCCGTTCGCCACCTTCGC 413 || |||| ||| ||| || | || || ||| || || | |||||| |||||||| Sbjct 247 AGAAGAAAAACGCGGTGACCGACCG-CGA-CCTGGTGCCGGCCGAGTTCGCGACCTTCGC 304 Query 414 TCT 416 || Sbjct 305 CCT 307 >seq1263006 Length=321 Score = 105 bits (116), Expect = 2e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 38504 GTGTTCGACCGCCCGACCCCGTACACCCTGAACAGCCTGCGCATGGTGCCAGCCAGGAAA 38563 ||||||||||| || |||||||||||||| |||| |||||| || | || |||| ||| Sbjct 95 GTGTTCGACCGGCCTACCCCGTACACCCTCGACAGTCTGCGCCTGATACCGGCCACCAAA 154 Query 38564 GACCGGCTCGA-AGCGCGGGTTTGGTTCAAGGACGAAGCGGACGGGGCGCAGCCTGCATC 38622 || | ||| || || ||||| ||| ||||||||||||||||| |||| ||| || | Sbjct 155 GAGC-GCTTGAGTGCTCGGGTCTGGATCAAGGACGAAGCGGACAAGGCGTCGCCGGCCAC 213 Query 38623 GGTGTGGATTGCCCCCGAGGTCTACGGTGG 38652 | ||| | |||||||||| | ||| || Sbjct 214 GCGCTGGCTGACCCCCGAGGTATTCGGCGG 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123235566999944