Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq599987 123 3e-23 seq599990 114 2e-20 seq791531 100 4e-16 seq599989 87.8 2e-12 >seq599987 Length=38784 Score = 123 bits (136), Expect = 3e-23 Identities = 136/179 (76%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| ||||||||||||||||| || | || || || ||||| |||||||| ||||| | Sbjct 15435 TACCTGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAA 15494 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 |||||||| ||||| | ||||| ||||| |||||||| ||||| ||||||| ||| | Sbjct 15495 GGACTCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGCCAACAAGAG 15554 Query 62311 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 62367 | || | || ||| ||| | | ||||| ||||| |||| |||||| |||||| Sbjct 15555 AGAGTTGCGAACACC--ATGAACAGCAATTTTTTCTTTGAGAGCAGCCCAATCCCAAAG 15611 Score = 113 bits (124), Expect = 6e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 61918 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 61977 |||| | ||||||||||| ||||| || |||| | || || || ||||| || || Sbjct 2112 CCATGCATAAAAATGCATTGATGTTAGCTTTCCATAATTTGGCTCAGCAATATGTATGTT 2171 Query 61978 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTT 62037 | ||| ||||| ||||| ||||| ||||| || || || |||||||| ||||| || || Sbjct 2172 GAGAGACTGACTCTGATCAATGAAAGCTCCTCTATCAGCTGCCATTTTGATAATTGTTTT 2231 Query 62038 TTGTGGAATTTCCCAAATAGTTTTATA 62064 || ||||||||||| | ||||||||| Sbjct 2232 CTGAGGAATTTCCCACACAGTTTTATA 2258 Score = 113 bits (124), Expect = 6e-20 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 || ||||| |||||||| | ||||| | || || ||||| || | |||||| |||| Sbjct 36365 TTATTTCCACCCTGATCCACATATCTGGAAGTATTGTTATATACACGCAACATAGGAACC 36424 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 | ||||||||||||||||||||| || | || || |||||| ||||| ||| | Sbjct 36425 AGACCATTGGATGTACCATTGGTGCCAGCAATGTAACTTCCAGCAGCACGGATA----CA 36480 Query 63341 ATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 || || || || || || ||||| ||| ||||| | || ||| | || || || Sbjct 36481 ATGGACGCTAAGGCCAATACCACCTGCAGATTTGGAGATCATGGCACATTGCTTCAAAGT 36540 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 |||||| || || || ||||| || ||| ||||| | || |||||||| Sbjct 36541 ATCATAAATACCTTCAATACTGTCCTCCTTCATGCACAACAGGAAACAGCT 36591 Score = 105 bits (116), Expect = 8e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 62425 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62484 |||| |||| || ||||| || || ||| ||||||||||| || || ||||| || Sbjct 16297 TCCTTCATAAGTCTCGTAAGGACCCAAAGCCTCTGCTAGTTCACAGCTTGCTTCTAAAGC 16356 Query 62485 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAA 62544 || || || || ||||| || |||| |||||| | ||| || || || ||||| Sbjct 16357 TCCATAGTAGATTGTTTCAAATATCTGGATATTTAACTTTTGTGCCTCTTCACTCTCAAA 16416 Query 62545 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 62604 |||||| | | ||||||||||| || || | ||||||||||| ||||| ||||| | Sbjct 16417 TGGATACCTCATAAGAATAAACGCATCGGCAAGGCCTTGAACACCGATACCAATAGGACG 16476 Query 62605 ATGTCTCTTATTAGAG 62620 ||| | | | || ||| Sbjct 16477 ATGCCGCATGTTTGAG 16492 >seq599990 Length=15331 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 63820 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879 |||||| |||||||||||||| ||||| || || ||||| || ||||| | |||||||| Sbjct 7562 TTTTTTAGTTTCTTTGTGTAGGTTTGAAACTGCAATTCTTGCCGCTAGTACAGCATAATC 7621 Query 63880 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 63939 ||||||| || || || ||||| |||| ||||| || | |||| ||||| || Sbjct 7622 AGGATGTTTGGTTGTCATTGTTGCTGCAGTTTCAGCTGCAAGGTTATCCAGCTCTACGGT 7681 Query 63940 TGTTACACCATTATATATTCCTTGGATAACCTTCATAG 63977 |||||||||| ||||| || |||||| |||| || Sbjct 7682 TGTTACACCAGAATATAAACCACTGATAACTTTCAGAG 7719 >seq791531 Length=8839 Score = 100 bits (110), Expect = 4e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 ||| |||| ||||||||||| | |||||||||||| || ||||| | || || || || Sbjct 7007 ATCCTTAATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACATTCTCCATAGC 6948 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || || ||||| ||||| || || || | || |||||| || || | ||| Sbjct 6947 AATTTGGAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTGAACCTTTC 6888 Query 33041 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100 | | ||||| || || || || ||||| || || || || || | ||||| || Sbjct 6887 AACCAGGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAGAACATGGGAAAT 6828 Query 33101 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33135 |||| |||| || ||| |||| | | ||||| Sbjct 6827 GAAATGCCTTTCTTCAGGTTTTAGCTGCTGCCAAT 6793 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| ||| |||||||| | ||||| || || || ||||| |||||||||||| | Sbjct 6576 TTCGATAAATCTACTTCTTCAGCCGTCCAGAAAGACGCTTCTGCTTTTTTATACATAGCC 6517 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 || || |||||||| |||||||| ||||| |||||||| |||| || Sbjct 6516 CAAATATCATGATACTGAATTGGGAAAATGACAAATCTTCTTGGGTT 6470 >seq599989 Length=4882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| || ||| | |||||||||||| ||||| || || ||||||| | ||||| Sbjct 4426 AGTTCCAGCTCCAAAGAGGGTAGGAGAAGCATGAGTGAAGTATCTTTCAGATAACAGATT 4485 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 || |||| ||||| | ||||| ||| || | || || || || || |||||||| | Sbjct 4486 ATATGTCTGTATAGCAGCATCTATGTCCTCACCG-TGTATGCCAACAGCTACACGCATCA 4544 Query 63585 ACATGTGCTGAGGTCTTTCAAC 63606 |||| || ||||| | |||||| Sbjct 4545 ACATATGTTGAGGCCGTTCAAC 4566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622563304363200