Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq302910 98.7 8e-16 seq708045 87.8 1e-12 seq741633 84.2 2e-11 >seq302910 Length=12142 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||||||||| || | || || ||||| || || ||||| ||||| Sbjct 4192 ATGCAAATTTTTGTCAAGACATTAACAGGTAAAACAATAACACTGGAAGTTGAACCATCA 4133 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || || ||||| ||||||||||| |||| || || Sbjct 4132 GATACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 4073 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||||| ||| || ||||||||||||||| ||| | | || || ||| Sbjct 4072 CAGAGGCTTATTTTTGCTGGAAAACAATTGGAAGATGGGCGTACTTTATCTGACTACAAT 4013 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || ||| ||||||| || | | || || ||||| Sbjct 4012 ATTCAGAAAGAGTCCACATTACATTTGGTTCTAAGGCTTCGTGGTGG 3966 >seq708045 Length=25632 Score = 87.8 bits (96), Expect = 1e-12 Identities = 166/243 (68%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 111171 TTATAAGAGTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGT 111230 |||||||| | |||| |||| || ||||| || || |||| || || || || ||| | Sbjct 10376 TTATAAGAAATCAAAA-TGCAGATATTTGTGAAGACTTTGACGGGGAAGACTATCACCTT 10434 Query 111231 GGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGG 111290 || ||| | ||| | ||| | || ||| ||||| || |||||||| Sbjct 10435 AGAGGTAGAAGCTTCGGATACAATTGAAAATGTTAAAGCCAAAATCCAGGATAAAGAAGG 10494 Query 111291 CGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAAC 111350 ||||| ||||| || || || || | ||| ||||| || ||||||||| ||| Sbjct 10495 AATTCCCCCGGATCAGCAGAGACTGATATTTGCTGGCAAGCAGTTGGAAGATGGCCGAAC 10554 Query 111351 TATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGG 111410 || | ||||||||||| || ||||||||||| |||| | ||||| | || || || Sbjct 10555 ATTGTCTGATTATAATATCCAGAAAGAATCTACTTTACACCTTGTGTTAAGACTCCGTGG 10614 Query 111411 TGG 111413 ||| Sbjct 10615 TGG 10617 >seq741633 Length=11487 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| ||||| | || || |||||||| || | || ||| | Sbjct 9096 ATGCAGATTTTTGTAAAAACTCTTACAGGGAAAACCATAACATTAGAGGTTGAAGCATCT 9155 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | |||||| ||||||| || || |||||| | || || || Sbjct 9156 GACACTATTGAGAATGTAAAAGCAAAAATTCAAGATAAGGAAGGCATCCCACCTGACCAG 9215 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || | |||| ||| ||||||||| | || ||| ||| | | || || ||| Sbjct 9216 CAGAGATTGATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACTCTTTCAGACTACAAT 9275 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || |||||||||||||||||||| ||| || | || | || |||| Sbjct 9276 ATCCAGAAAGAATCTACACTACATTTGGTGCTGAGGCTCAGAGGAGGCA 9324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415834810746400