Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq856439 105 5e-18 seq399305 105 5e-18 seq17376 98.7 7e-16 seq767331 96.9 3e-15 seq193865 96.9 3e-15 seq26530 95.1 9e-15 seq1320977 84.2 2e-11 >seq856439 Length=3663 Score = 105 bits (116), Expect = 5e-18 Identities = 105/132 (80%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACA-CGACGGCCGACCCACACAA 108524 ||||||| ||| ||| | |||||||||||| |||| |||| |||||||| ||||| Sbjct 3242 TGGGTGCGCGACCACCGCCAGCACCACAAGTACAGCGACACCGAC-GCCGACCCCCACAA 3184 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGA 108584 ||||| |||||| |||| ||||||||| | || ||||||||| || |||| ||||||| Sbjct 3183 CGCCACCAGGGGCTTCTTCTTCTCGCACATCGGCTGGCTCATGGTGCGCAAGCACCCCGA 3124 Query 108585 CGTGATCTCGGC 108596 || ||| |||| Sbjct 3123 GGTCATC-CGGC 3113 >seq399305 Length=2281 Score = 105 bits (116), Expect = 5e-18 Identities = 105/132 (80%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACA-CGACGGCCGACCCACACAA 108524 ||||||| ||| ||| | |||||||||||| |||| |||| |||||||| ||||| Sbjct 653 TGGGTGCGCGACCACCGCCAGCACCACAAGTACAGCGACACCGAC-GCCGACCCCCACAA 711 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGA 108584 ||||| |||||| |||| ||||||||| | || ||||||||| || |||| ||||||| Sbjct 712 CGCCACCAGGGGCTTCTTCTTCTCGCACATCGGCTGGCTCATGGTGCGCAAGCACCCCGA 771 Query 108585 CGTGATCTCGGC 108596 || ||| |||| Sbjct 772 GGTCATC-CGGC 782 >seq17376 Length=920 Score = 98.7 bits (108), Expect = 7e-16 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 108869 TGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACG 108928 ||||| ||| | ||| || |||||||| |||||||||||||||||||||||||||| | Sbjct 420 TGGTGTCGGTGGCGGCGCTGGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCCTGGG 361 Query 108929 ACTACAAGGCCGCCGAGTTGGG 108950 |||||||||| |||||| |||| Sbjct 360 ACTACAAGGCGGCCGAGCTGGG 339 >seq767331 Length=4460 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||||| ||| ||| | || |||||||||| | || ||| |||||||| |||||| Sbjct 4018 TGGGTGCGCGACCACCGCGTGCACCACAAGTTCAGCGAGACGGACGCCGACCCGCACAAC 4077 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 || | | || |||| ||| |||||||||| |||||||||||| |||| ||||||| Sbjct 4078 GCGCGCCGCGGCTTCTTCTTCGCGCACGTGGGCTGGCTCATGATGCGCAAGCACCCCGAG 4137 Query 108586 GTGATC 108591 || ||| Sbjct 4138 GTCATC 4143 >seq193865 Length=1712 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||||| ||| ||| | || |||||||||| | || ||| |||||||| |||||| Sbjct 849 TGGGTGCGCGACCACCGCGTGCACCACAAGTTCAGCGAGACGGACGCCGACCCGCACAAC 790 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 || | | || |||| ||| |||||||||| |||||||||||| |||| ||||||| Sbjct 789 GCGCGCCGCGGCTTCTTCTTCGCGCACGTGGGCTGGCTCATGATGCGCAAGCACCCCGAG 730 Query 108586 GTGATC 108591 || ||| Sbjct 729 GTCATC 724 >seq26530 Length=16574 Score = 95.1 bits (104), Expect = 9e-15 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 108871 GTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGAC 108930 ||||| | | |||| |||||||||| |||||||||||||||||||| ||||| | ||| Sbjct 1575 GTGGCAGTGGTGGCGTTCGGCGAGGGCTGGCACAACTACCACCACGTCTTCCCGTGGGAC 1634 Query 108931 TACAAGGCCGCCGAGTTGGGGAACGAC 108957 |||||||| |||||| |||| ||| || Sbjct 1635 TACAAGGCGGCCGAGCTGGGCAACTAC 1661 >seq1320977 Length=497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 108877 GCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAG 108936 ||| ||| ||| |||||||| |||||||||| ||||||| ||||||| |||||||||| Sbjct 272 GCGCTGGGTCTGGGCGAGGGCTGGCACAACTTCCACCACACGTTCCCCAGCGACTACAAG 331 Query 108937 GCCGCCGAGTTGGG 108950 || |||||| |||| Sbjct 332 GCGGCCGAGCTGGG 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 375270470962848