Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq741633 131 2e-25 seq302910 105 6e-18 seq1341392 98.7 9e-16 >seq741633 Length=11487 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| ||||| |||||||| || ||||| ||| || ||||||||||| Sbjct 9064 GTAGACTCTTTCTGAATGTTGTAATCTGACAAAGTGCGGCCATCTTCAAGCTGTTTTCCT 9005 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | ||||||| ||| || || || ||||| || ||||||||| ||| || ||| Sbjct 9004 GCAAAAATCAATCTCTGTTGGTCTGGTGGTATACCTTCCTTGTCCTGGATCTTTGCCTTC 8945 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| ||||||| || | |||||||| |||||||| Sbjct 8944 ACGTTCTCTATGGTGTCTGATGCCTCCACTTCGAGTGTTATAGTTTTGCCAGTCAGAGTC 8885 Query 127097 TTTACAAAAATCTGCAT 127113 |||||||| |||||||| Sbjct 8884 TTTACAAAGATCTGCAT 8868 Score = 114 bits (126), Expect = 1e-20 Identities = 160/219 (73%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 || ||||||||||| ||||| ||||| || |||||||| || | ||||| ||| Sbjct 9308 CAGCACCAAATGTAGTGTAGATTCTTTCTGGATATTGTAGTCTGAAAGAGTGCGGCCATC 9249 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || || ||||| ||||| | ||||||| |||||| || || || ||||| ||||| | Sbjct 9248 CTCAAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGTGGGATGCCTTCCTTAT- 9190 Query 127021 CGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACC 127078 | ||| ||| ||| || | | || | ||||| | | || || || || | || | Sbjct 9189 CTTGAATTTTTGCTTTTACATTCTCAATAGTGTCAGATGCT-TCAACCTCTAATGTTATG 9131 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||||| || || |||||||||||||||||||||||| || Sbjct 9130 GTTTTCCCTGTAAGAGTTTTTACAAAAATCTGCATGCCT 9092 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | | || ||||| ||| | ||||| || || ||||| |||||||| | Sbjct 9778 CCACCACGCAGCCTCAGCACCAGATGCAAAGTAGATTCCTTCTGAATGTTGTAATCCGAC 9719 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || ||||| |||| | |||||||| || ||||| Sbjct 9718 AGGGTTCGTCCATCTTCCAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 9659 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||| || ||| | | ||| | ||||| | | || || Sbjct 9658 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTTCAATAGTGTCTGAAGCTTCTACC 9599 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || || || || |||||||||||||| Sbjct 9598 TCCAGGGTAATTGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 9552 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || | || |||||||| | ||||| || ||||| || |||||||| Sbjct 10463 TCCACCTCTTAGCCTCAGAACCAAATGCAGAGTAGATTCCTTTTGGATGTTGTAATCTGA 10404 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| || | ||||||||| || |||| | |||||| ||||| ||||| Sbjct 10403 TAAGGTCCTTCCATCTTCCAACTGTTTTCCTGCAAAGATGAGTCGCTGTTGATCTGGAGG 10344 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| |||||||| ||| || ||||| || | || | |||||| | | || | Sbjct 10343 AATGCCTTCCTTGTCTTGGATCTT-TGCTTTGACATTCTCAATGGTGTCAGAAGCTTCCA 10285 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | || ||||| || ||||| || |||||||||||||| Sbjct 10284 CCTCCAGAGTAATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 10236 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || | |||||||| ||| | || || || || |||||||||||||| | Sbjct 8866 CCTCCTCGCAACCTCAACACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCAGAC 8807 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| | || | || ||||| || || || Sbjct 8806 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATGAGACGTTGCTGGTCTGGTGGA 8747 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || |||||| ||| || ||| | | ||| | ||||| | | || ||| Sbjct 8746 ATTCCTTCTTTGTCCTGGATCTTTGCCTTCACATTTTCAATTGTGTCTGAAGCTTCCACT 8687 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || || || ||||||||||||||||| Sbjct 8686 TCCAGTGTGATGGTCTTGCCTGTGAGGGTCTTTACAAAAATCTGCAT 8640 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || | | ||||| ||| | || |||||||| ||||||||||| || Sbjct 10006 CCACCTCGCAACCTTAGCACCAGATGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAT 9947 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || ||||| |||| | || ||||| || ||||| Sbjct 9946 AGGGTCCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCTGGAGGA 9887 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || ||| ||| ||| || | | ||||| |||||| | | || ||| Sbjct 9886 ATACCTTCTTTATCCTGGATCTTCGCTTTCACATTTTCGATGGTGTCTGAAGCTTCCACT 9827 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || || || || ||||| |||||||| Sbjct 9826 TCCAGGGTAATGGTTTTTCCAGTAAGTGTCTTCACAAAGATCTGCAT 9780 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || || | ||||||||| | || || ||||| |||||||| || || Sbjct 11375 TCCACCTCTCAAACGTAGCACCAAATGAAGAGTGGATTCTTTCTGAATATTATAGTCCGA 11316 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || | |||||| || || |||| | |||||| ||||| || || Sbjct 11315 AAGTGTACGTCCATCTTCCAACTGTTTGCCTGCAAAGATGAGTCGCTGTTGATCTGGGGG 11256 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||| || ||||||| ||| | | || | ||||| | | || || Sbjct 11255 AATGCCTTCCTTATCTTGGATTTTCGCCTTCACATTCTCAATTGTGTCGGAAGCTTCCAC 11196 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || ||||| ||||| || ||||||||||||||| Sbjct 11195 CTCCAGAGTAATGGTCTTCCCGGTAAGAGTCTTCACAAAAATCTGCATG 11147 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | | || ||||| ||| | || || || || ||||| |||||||| | Sbjct 10918 CCACCACGCAGCCTCAGCACCAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCTGAC 10859 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || |||||| |||| | || ||||| || || || Sbjct 10858 AGGGTTCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCTGGTGGA 10799 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| || || ||| | | || | |||||| | | ||| ||| Sbjct 10798 ATACCTTCTTTGTCTTGTATCTTTGCCTTCACATTCTCAATGGTGTCTGAAGCCTCCACT 10739 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || || || || |||||||||||||| Sbjct 10738 TCCAATGTAATTGTCTTGCCTGTAAGTGTCTTCACAAAAATCTGCAT 10692 >seq302910 Length=12142 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||| || |||||||| | || | ||| || || ||||| ||||| ||| Sbjct 11150 CTTTTTGTATGTTGTAATCTGAGAGAGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAGA 11209 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGT 127042 | |||||||| ||||| || ||||| || || ||||| ||| ||| ||||| | | | Sbjct 11210 TTAATCGCTGTTGATCTGGCGGTATTCCTTCTTTGTCT-TGAATTTTTGCTTTTACATTT 11268 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | ||||| | ||| ||||| | || | ||||| || ||||||||||||||| Sbjct 11269 TCAATTGTGTCTGATGGCTCAACTTCCAATGTTATTGTTTTCCCTGTCAGAGTTTTTACA 11328 Query 127103 AAAATCTGCATG 127114 |||||||||||| Sbjct 11329 AAAATCTGCATG 11340 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||| ||||||||||| | || ||| ||| ||||| ||||| || ||| ||| Sbjct 4320 CTTTTTGGATATTGTAATCTGAGAGGGTACGACCATCTTCTAGTTGTTTCCCTGCGAAGA 4379 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 | | | ||| ||||| || || || || || || ||| |||||| ||| | | || Sbjct 4380 TGAGCCTCTGTTGATCAGGTGGGATCCCTTCTTTATCCTGGATTTTTGCCTTAACATTTT 4439 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 | | ||| || | || ||||| | || | ||||| || || |||||||| |||| Sbjct 4440 CTATGGTATCTGATGGTTCCACTTCCAGAGTTATTGTTTTACCAGTGAGAGTTTTCACAA 4499 Query 127104 AAATCTGCAT 127113 |||| ||||| Sbjct 4500 AAATTTGCAT 4509 >seq1341392 Length=603 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||||||||| || || ||||| ||| || ||||| |||||| Sbjct 249 GTGGACTCCTTTTGAATATTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGCTTTCCA 190 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || |||||| | ||| || || || || || || ||||| ||| ||| | | || || Sbjct 189 GCAAAGATCAGCCTCTGTTGGTCTGGTGGAATACCTTCCTTATCC-TGAATCTTGGCTTT 131 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | ||| | |||||| | ||| ||||| | ||| | || ||||| ||||| || Sbjct 130 GACATTTTCAATGGTGTCTGATGCCTCTACTTCAAGGGTGATTGTCTTGCCAGTCAGGGT 71 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 70 CTTCACGAAGATCTGCAT 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467194442950080