Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq638214 125 9e-24 seq791531 93.3 5e-14 seq1359195 82.4 9e-11 seq13652 82.4 9e-11 >seq638214 Length=1998 Score = 125 bits (138), Expect = 9e-24 Identities = 115/139 (83%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 140594 AGGCGAGACA-ACCTGGTTGCGGGAAGTTCCTTAGAGCTCTAAC-TACCACCCCCATTTG 140651 |||| | ||| |||| |||||||||| ||||||||| ||||| ||||||| |||||| Sbjct 1257 AGGCAATACACACCTTGTTGCGGGAAACCCCTTAGAGC-CTAACCTACCACCTTCATTTG 1315 Query 140652 GAAACTTTTGGGGGGATCTCGGTTAATTACCGAACCCGATGGTAA-AAAGGTTAGAGATT 140710 ||||||| ||| |||| ||||| |||| ||||||| | ||||||| || |||||| |||| Sbjct 1316 GAAACTTATGGAGGGAACTCGGGTAATGACCGAACACAATGGTAATAACGGTTAG-GATT 1374 Query 140711 GGATAATCCGCAGGCGAGA 140729 || |||||||||||| || Sbjct 1375 GGGCAATCCGCAGGCGCGA 1393 >seq791531 Length=8839 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATT-CGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||| || | || || |||||||| | | | | | ||||||||||| | ||| | |||| Sbjct 7339 CCTCATCTCTTGAAATAAGTTCATTGCTAAATGTA-AGACCTGGCATTAAACCTCTCTTC 7281 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | ||||||||| || ||| |||||||||||| || || |||||| || || Sbjct 7280 TTAAGCCAGAAAATAGCTGCAAAACTGCCAGAGAAGAATATGCCTTCCACAGCAGCAAAT 7221 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 |||| || |||||| ||||| | | || | | ||| |||| | | ||||| | Sbjct 7220 GCAATTACACGCTCTGCAAATGTGGCAGATTCATCAGCAATCCACCTGAGTGCCCAGTCA 7161 Query 127718 GCCTTTTTCTCGATACATGG 127737 |||||||||| | |||||| Sbjct 7160 GCCTTTTTCTTTACACATGG 7141 >seq1359195 Length=732 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 175901 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 175960 ||||||||||| |||| | || || || ||||| ||||||| || || || ||| Sbjct 706 GTGAAGATGTATCTCGGGCTGGCCGAGTCCTTCCCACCGCTGAGACGTGTGCCGAACTGA 647 Query 175961 CCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACA 176020 || |||| || | |||||| ||||| ||||| | ||| | |||| |||| | Sbjct 646 CCGATGGGCTGCAGCACATTGATGTTGTTGCTGCCCACAAAGTTCTGAGCCAGGTTGATA 587 Query 176021 ATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCC 176080 || || | ||| || ||||||||| ||||| ||||| | || ||||| | | Sbjct 586 ATTGTCGACATGAGTGACTGTTCACCGTGGTGGTACGCCGAGTGTTCGGCCACGGAGCCT 527 Query 176081 GCCAACTGCGCCACCTTCATCTC 176103 |||||||| || || |||| ||| Sbjct 526 GCCAACTGGGCAACTTTCACCTC 504 >seq13652 Length=6622 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 175901 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 175960 ||||||||||| |||| | || || || ||||| ||||||| || || || ||| Sbjct 2807 GTGAAGATGTATCTCGGGCTGGCCGAGTCCTTCCCACCGCTGAGACGTGTGCCGAACTGA 2748 Query 175961 CCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACA 176020 || |||| || | |||||| ||||| ||||| | ||| | |||| |||| | Sbjct 2747 CCGATGGGCTGCAGCACATTGATGTTGTTGCTGCCCACAAAGTTCTGAGCCAGGTTGATA 2688 Query 176021 ATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCC 176080 || || | ||| || ||||||||| ||||| ||||| | || ||||| | | Sbjct 2687 ATTGTCGACATGAGTGACTGTTCACCGTGGTGGTACGCCGAGTGTTCGGCCACGGAGCCT 2628 Query 176081 GCCAACTGCGCCACCTTCATCTC 176103 |||||||| || || |||| ||| Sbjct 2627 GCCAACTGGGCAACTTTCACCTC 2605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602790057450720